Strain Fitness in Escherichia coli BL21 around ECD_02556

Experiment: Ox4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02554 and ECD_02555 are separated by 3 nucleotidesECD_02555 and ECD_02556 are separated by 105 nucleotidesECD_02556 and ECD_02557 are separated by 66 nucleotidesECD_02557 and ECD_02558 overlap by 8 nucleotides ECD_02554: ECD_02554 - glucitol/sorbitol-specific enzyme IIA component of PTS, at 2,667,328 to 2,667,699 _02554 ECD_02555: ECD_02555 - sorbitol-6-phosphate dehydrogenase, at 2,667,703 to 2,668,482 _02555 ECD_02556: ECD_02556 - sorbitol-responsive srl operon transcriptional activator, at 2,668,588 to 2,668,947 _02556 ECD_02557: ECD_02557 - sorbitol-inducible srl operon transcriptional repressor, at 2,669,014 to 2,669,787 _02557 ECD_02558: ECD_02558 - D-arabinose 5-phosphate isomerase, at 2,669,780 to 2,670,745 _02558 Position (kb) 2668 2669Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2667.744 kb on - strandat 2667.841 kb on - strand, within ECD_02555at 2667.850 kb on + strand, within ECD_02555at 2667.851 kb on - strand, within ECD_02555at 2667.868 kb on + strand, within ECD_02555at 2667.868 kb on + strand, within ECD_02555at 2667.869 kb on - strand, within ECD_02555at 2667.962 kb on - strand, within ECD_02555at 2667.962 kb on - strand, within ECD_02555at 2667.962 kb on - strand, within ECD_02555at 2667.962 kb on - strand, within ECD_02555at 2668.048 kb on + strand, within ECD_02555at 2668.048 kb on + strand, within ECD_02555at 2668.225 kb on + strand, within ECD_02555at 2668.233 kb on + strand, within ECD_02555at 2668.300 kb on + strand, within ECD_02555at 2668.300 kb on + strand, within ECD_02555at 2668.300 kb on + strand, within ECD_02555at 2668.300 kb on + strand, within ECD_02555at 2668.300 kb on + strand, within ECD_02555at 2668.300 kb on + strand, within ECD_02555at 2668.342 kb on + strand, within ECD_02555at 2668.342 kb on + strand, within ECD_02555at 2668.342 kb on + strand, within ECD_02555at 2668.342 kb on + strand, within ECD_02555at 2668.343 kb on - strand, within ECD_02555at 2668.345 kb on + strand, within ECD_02555at 2668.345 kb on + strand, within ECD_02555at 2668.345 kb on + strand, within ECD_02555at 2668.345 kb on + strand, within ECD_02555at 2668.345 kb on + strand, within ECD_02555at 2668.345 kb on + strand, within ECD_02555at 2668.345 kb on + strand, within ECD_02555at 2668.345 kb on + strand, within ECD_02555at 2668.345 kb on + strand, within ECD_02555at 2668.345 kb on + strand, within ECD_02555at 2668.345 kb on + strand, within ECD_02555at 2668.345 kb on + strand, within ECD_02555at 2668.345 kb on + strand, within ECD_02555at 2668.345 kb on + strand, within ECD_02555at 2668.345 kb on + strand, within ECD_02555at 2668.345 kb on + strand, within ECD_02555at 2668.345 kb on + strand, within ECD_02555at 2668.345 kb on + strand, within ECD_02555at 2668.345 kb on + strand, within ECD_02555at 2668.345 kb on + strand, within ECD_02555at 2668.346 kb on - strand, within ECD_02555at 2668.346 kb on - strand, within ECD_02555at 2668.346 kb on - strand, within ECD_02555at 2668.346 kb on - strand, within ECD_02555at 2668.346 kb on - strand, within ECD_02555at 2668.346 kb on - strand, within ECD_02555at 2668.346 kb on - strand, within ECD_02555at 2668.346 kb on - strand, within ECD_02555at 2668.346 kb on - strand, within ECD_02555at 2668.346 kb on - strand, within ECD_02555at 2668.358 kb on + strand, within ECD_02555at 2668.358 kb on + strand, within ECD_02555at 2668.398 kb on + strand, within ECD_02555at 2668.398 kb on + strand, within ECD_02555at 2668.398 kb on + strand, within ECD_02555at 2668.398 kb on + strand, within ECD_02555at 2668.398 kb on + strand, within ECD_02555at 2668.398 kb on + strand, within ECD_02555at 2668.398 kb on + strand, within ECD_02555at 2668.398 kb on + strand, within ECD_02555at 2668.399 kb on - strand, within ECD_02555at 2668.399 kb on - strand, within ECD_02555at 2668.411 kb on + strandat 2668.411 kb on + strandat 2668.411 kb on + strandat 2668.411 kb on + strandat 2668.411 kb on + strandat 2668.412 kb on - strandat 2668.412 kb on - strandat 2668.422 kb on + strandat 2668.423 kb on - strandat 2668.432 kb on + strandat 2668.432 kb on + strandat 2668.433 kb on - strandat 2668.433 kb on - strandat 2668.501 kb on + strandat 2668.519 kb on + strandat 2668.522 kb on + strandat 2668.522 kb on + strandat 2668.522 kb on + strandat 2668.522 kb on + strandat 2668.522 kb on + strandat 2668.522 kb on + strandat 2668.522 kb on + strandat 2668.522 kb on + strandat 2668.522 kb on + strandat 2668.522 kb on + strandat 2668.522 kb on + strandat 2668.522 kb on + strandat 2668.522 kb on + strandat 2668.522 kb on + strandat 2668.522 kb on + strandat 2668.522 kb on + strandat 2668.554 kb on + strandat 2668.554 kb on + strandat 2668.555 kb on - strandat 2668.555 kb on - strandat 2668.571 kb on + strandat 2668.571 kb on + strandat 2668.571 kb on + strandat 2668.571 kb on + strandat 2668.571 kb on + strandat 2668.571 kb on + strandat 2668.572 kb on - strandat 2668.669 kb on - strand, within ECD_02556at 2668.688 kb on + strand, within ECD_02556at 2668.688 kb on + strand, within ECD_02556at 2668.688 kb on + strand, within ECD_02556at 2668.689 kb on - strand, within ECD_02556at 2668.689 kb on - strand, within ECD_02556at 2668.689 kb on - strand, within ECD_02556at 2668.735 kb on - strand, within ECD_02556at 2668.797 kb on + strand, within ECD_02556at 2668.869 kb on - strand, within ECD_02556at 2668.916 kb on + strandat 2668.917 kb on - strandat 2668.963 kb on + strandat 2668.963 kb on + strandat 2668.963 kb on + strandat 2668.963 kb on + strandat 2668.963 kb on + strandat 2668.964 kb on - strandat 2668.964 kb on - strandat 2668.979 kb on + strandat 2668.994 kb on + strandat 2669.050 kb on + strandat 2669.050 kb on + strandat 2669.050 kb on + strandat 2669.050 kb on + strandat 2669.050 kb on + strandat 2669.067 kb on + strandat 2669.095 kb on + strand, within ECD_02557at 2669.095 kb on + strand, within ECD_02557at 2669.095 kb on + strand, within ECD_02557at 2669.166 kb on + strand, within ECD_02557at 2669.166 kb on + strand, within ECD_02557at 2669.166 kb on + strand, within ECD_02557at 2669.166 kb on + strand, within ECD_02557at 2669.166 kb on + strand, within ECD_02557at 2669.170 kb on + strand, within ECD_02557at 2669.170 kb on + strand, within ECD_02557at 2669.170 kb on + strand, within ECD_02557at 2669.170 kb on + strand, within ECD_02557at 2669.170 kb on + strand, within ECD_02557at 2669.190 kb on + strand, within ECD_02557at 2669.190 kb on + strand, within ECD_02557at 2669.190 kb on + strand, within ECD_02557at 2669.191 kb on - strand, within ECD_02557at 2669.212 kb on - strand, within ECD_02557at 2669.220 kb on + strand, within ECD_02557at 2669.220 kb on + strand, within ECD_02557at 2669.277 kb on + strand, within ECD_02557at 2669.277 kb on + strand, within ECD_02557at 2669.352 kb on + strand, within ECD_02557at 2669.352 kb on + strand, within ECD_02557at 2669.352 kb on + strand, within ECD_02557at 2669.355 kb on + strand, within ECD_02557at 2669.355 kb on + strand, within ECD_02557at 2669.355 kb on + strand, within ECD_02557at 2669.355 kb on + strand, within ECD_02557at 2669.355 kb on + strand, within ECD_02557at 2669.355 kb on + strand, within ECD_02557at 2669.355 kb on + strand, within ECD_02557at 2669.385 kb on + strand, within ECD_02557at 2669.385 kb on + strand, within ECD_02557at 2669.399 kb on + strand, within ECD_02557at 2669.424 kb on + strand, within ECD_02557at 2669.424 kb on + strand, within ECD_02557at 2669.424 kb on + strand, within ECD_02557at 2669.425 kb on - strand, within ECD_02557at 2669.578 kb on + strand, within ECD_02557at 2669.578 kb on + strand, within ECD_02557at 2669.578 kb on + strand, within ECD_02557at 2669.578 kb on + strand, within ECD_02557at 2669.578 kb on + strand, within ECD_02557at 2669.578 kb on + strand, within ECD_02557at 2669.579 kb on - strand, within ECD_02557at 2669.581 kb on - strand, within ECD_02557at 2669.589 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.667 kb on - strand, within ECD_02557at 2669.712 kb on + strandat 2669.793 kb on + strandat 2669.793 kb on + strandat 2669.793 kb on + strandat 2669.793 kb on + strandat 2669.818 kb on - strandat 2669.887 kb on + strand, within ECD_02558

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Per-strain Table

Position Strand Gene LocusTag Fraction Ox4
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2,667,744 - -0.1
2,667,841 - ECD_02555 0.18 -2.1
2,667,850 + ECD_02555 0.19 +0.8
2,667,851 - ECD_02555 0.19 +0.4
2,667,868 + ECD_02555 0.21 -0.2
2,667,868 + ECD_02555 0.21 +0.1
2,667,869 - ECD_02555 0.21 +0.3
2,667,962 - ECD_02555 0.33 -0.3
2,667,962 - ECD_02555 0.33 -0.7
2,667,962 - ECD_02555 0.33 -0.2
2,667,962 - ECD_02555 0.33 +0.9
2,668,048 + ECD_02555 0.44 +0.6
2,668,048 + ECD_02555 0.44 -0.1
2,668,225 + ECD_02555 0.67 -0.9
2,668,233 + ECD_02555 0.68 +0.5
2,668,300 + ECD_02555 0.77 -0.1
2,668,300 + ECD_02555 0.77 +0.1
2,668,300 + ECD_02555 0.77 -1.7
2,668,300 + ECD_02555 0.77 -0.2
2,668,300 + ECD_02555 0.77 -0.5
2,668,300 + ECD_02555 0.77 -1.3
2,668,342 + ECD_02555 0.82 -1.6
2,668,342 + ECD_02555 0.82 +0.5
2,668,342 + ECD_02555 0.82 +0.1
2,668,342 + ECD_02555 0.82 +0.6
2,668,343 - ECD_02555 0.82 -0.3
2,668,345 + ECD_02555 0.82 -0.7
2,668,345 + ECD_02555 0.82 +2.6
2,668,345 + ECD_02555 0.82 -2.0
2,668,345 + ECD_02555 0.82 -0.2
2,668,345 + ECD_02555 0.82 +1.2
2,668,345 + ECD_02555 0.82 +1.0
2,668,345 + ECD_02555 0.82 -0.1
2,668,345 + ECD_02555 0.82 -0.8
2,668,345 + ECD_02555 0.82 +0.1
2,668,345 + ECD_02555 0.82 +0.9
2,668,345 + ECD_02555 0.82 -0.3
2,668,345 + ECD_02555 0.82 +0.0
2,668,345 + ECD_02555 0.82 -0.9
2,668,345 + ECD_02555 0.82 -1.2
2,668,345 + ECD_02555 0.82 +0.6
2,668,345 + ECD_02555 0.82 +1.2
2,668,345 + ECD_02555 0.82 +0.4
2,668,345 + ECD_02555 0.82 -0.4
2,668,345 + ECD_02555 0.82 -0.2
2,668,345 + ECD_02555 0.82 -0.5
2,668,346 - ECD_02555 0.82 +0.6
2,668,346 - ECD_02555 0.82 -0.0
2,668,346 - ECD_02555 0.82 -1.2
2,668,346 - ECD_02555 0.82 -1.4
2,668,346 - ECD_02555 0.82 -1.2
2,668,346 - ECD_02555 0.82 -0.5
2,668,346 - ECD_02555 0.82 -0.3
2,668,346 - ECD_02555 0.82 -0.4
2,668,346 - ECD_02555 0.82 -0.4
2,668,346 - ECD_02555 0.82 -1.3
2,668,358 + ECD_02555 0.84 -1.2
2,668,358 + ECD_02555 0.84 -0.3
2,668,398 + ECD_02555 0.89 -0.8
2,668,398 + ECD_02555 0.89 -0.6
2,668,398 + ECD_02555 0.89 +0.1
2,668,398 + ECD_02555 0.89 +0.4
2,668,398 + ECD_02555 0.89 +0.3
2,668,398 + ECD_02555 0.89 -2.0
2,668,398 + ECD_02555 0.89 +0.3
2,668,398 + ECD_02555 0.89 -0.4
2,668,399 - ECD_02555 0.89 +0.5
2,668,399 - ECD_02555 0.89 +0.5
2,668,411 + -0.6
2,668,411 + +2.6
2,668,411 + -0.1
2,668,411 + +0.5
2,668,411 + +2.4
2,668,412 - -0.5
2,668,412 - -1.0
2,668,422 + -0.4
2,668,423 - -0.2
2,668,432 + -0.3
2,668,432 + -0.5
2,668,433 - -1.9
2,668,433 - +0.2
2,668,501 + -0.5
2,668,519 + -0.5
2,668,522 + -1.5
2,668,522 + -0.9
2,668,522 + -0.9
2,668,522 + -0.3
2,668,522 + +0.2
2,668,522 + -0.4
2,668,522 + +0.4
2,668,522 + -0.1
2,668,522 + +2.2
2,668,522 + +2.8
2,668,522 + -0.5
2,668,522 + +0.5
2,668,522 + -0.7
2,668,522 + -0.1
2,668,522 + -0.3
2,668,522 + -0.8
2,668,554 + -1.2
2,668,554 + -0.5
2,668,555 - -0.4
2,668,555 - -0.1
2,668,571 + +0.3
2,668,571 + +0.0
2,668,571 + +1.0
2,668,571 + -0.2
2,668,571 + -0.8
2,668,571 + -0.5
2,668,572 - -1.4
2,668,669 - ECD_02556 0.23 -0.0
2,668,688 + ECD_02556 0.28 -0.2
2,668,688 + ECD_02556 0.28 +0.3
2,668,688 + ECD_02556 0.28 +0.2
2,668,689 - ECD_02556 0.28 -1.3
2,668,689 - ECD_02556 0.28 +0.2
2,668,689 - ECD_02556 0.28 -2.6
2,668,735 - ECD_02556 0.41 -0.6
2,668,797 + ECD_02556 0.58 -3.2
2,668,869 - ECD_02556 0.78 -0.2
2,668,916 + -0.8
2,668,917 - -1.4
2,668,963 + -1.6
2,668,963 + -0.6
2,668,963 + -0.9
2,668,963 + -2.4
2,668,963 + -1.0
2,668,964 - -2.4
2,668,964 - -2.6
2,668,979 + -1.8
2,668,994 + -2.3
2,669,050 + -2.2
2,669,050 + -1.5
2,669,050 + -2.5
2,669,050 + -1.0
2,669,050 + -0.8
2,669,067 + -1.8
2,669,095 + ECD_02557 0.10 -2.4
2,669,095 + ECD_02557 0.10 -2.1
2,669,095 + ECD_02557 0.10 -1.0
2,669,166 + ECD_02557 0.20 -1.9
2,669,166 + ECD_02557 0.20 -1.6
2,669,166 + ECD_02557 0.20 -2.2
2,669,166 + ECD_02557 0.20 -1.9
2,669,166 + ECD_02557 0.20 -2.2
2,669,170 + ECD_02557 0.20 -1.8
2,669,170 + ECD_02557 0.20 -1.0
2,669,170 + ECD_02557 0.20 -0.8
2,669,170 + ECD_02557 0.20 -1.5
2,669,170 + ECD_02557 0.20 -1.8
2,669,190 + ECD_02557 0.23 -2.8
2,669,190 + ECD_02557 0.23 -1.9
2,669,190 + ECD_02557 0.23 -1.1
2,669,191 - ECD_02557 0.23 -1.7
2,669,212 - ECD_02557 0.26 -1.0
2,669,220 + ECD_02557 0.27 -2.8
2,669,220 + ECD_02557 0.27 -0.3
2,669,277 + ECD_02557 0.34 +0.3
2,669,277 + ECD_02557 0.34 -3.0
2,669,352 + ECD_02557 0.44 -0.6
2,669,352 + ECD_02557 0.44 -1.9
2,669,352 + ECD_02557 0.44 -2.6
2,669,355 + ECD_02557 0.44 -2.5
2,669,355 + ECD_02557 0.44 -1.8
2,669,355 + ECD_02557 0.44 -0.4
2,669,355 + ECD_02557 0.44 -1.8
2,669,355 + ECD_02557 0.44 +1.2
2,669,355 + ECD_02557 0.44 -0.7
2,669,355 + ECD_02557 0.44 -0.5
2,669,385 + ECD_02557 0.48 -1.3
2,669,385 + ECD_02557 0.48 -1.4
2,669,399 + ECD_02557 0.50 -2.8
2,669,424 + ECD_02557 0.53 -1.8
2,669,424 + ECD_02557 0.53 -2.2
2,669,424 + ECD_02557 0.53 +2.0
2,669,425 - ECD_02557 0.53 -1.1
2,669,578 + ECD_02557 0.73 -0.6
2,669,578 + ECD_02557 0.73 -1.3
2,669,578 + ECD_02557 0.73 -1.5
2,669,578 + ECD_02557 0.73 -1.1
2,669,578 + ECD_02557 0.73 -1.2
2,669,578 + ECD_02557 0.73 -2.7
2,669,579 - ECD_02557 0.73 -2.4
2,669,581 - ECD_02557 0.73 -0.3
2,669,589 + ECD_02557 0.74 -3.2
2,669,666 + ECD_02557 0.84 -0.1
2,669,666 + ECD_02557 0.84 -1.8
2,669,666 + ECD_02557 0.84 -1.6
2,669,666 + ECD_02557 0.84 -3.3
2,669,666 + ECD_02557 0.84 -2.4
2,669,666 + ECD_02557 0.84 -2.9
2,669,666 + ECD_02557 0.84 -0.9
2,669,666 + ECD_02557 0.84 -2.6
2,669,666 + ECD_02557 0.84 -0.4
2,669,666 + ECD_02557 0.84 -0.8
2,669,666 + ECD_02557 0.84 -1.3
2,669,666 + ECD_02557 0.84 -1.2
2,669,666 + ECD_02557 0.84 -3.1
2,669,666 + ECD_02557 0.84 -1.5
2,669,666 + ECD_02557 0.84 -1.3
2,669,666 + ECD_02557 0.84 +1.6
2,669,667 - ECD_02557 0.84 -1.5
2,669,712 + -0.6
2,669,793 + +0.3
2,669,793 + +0.1
2,669,793 + -2.7
2,669,793 + -2.5
2,669,818 - -0.2
2,669,887 + ECD_02558 0.11 +0.1

Or see this region's nucleotide sequence