Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02444 and ECD_02445 are separated by 44 nucleotides ECD_02445 and ECD_02446 are separated by 60 nucleotides
ECD_02444: ECD_02444 - fused nitric oxide dioxygenase/dihydropteridine reductase 2, at 2,551,640 to 2,552,830
_02444
ECD_02445: ECD_02445 - regulatory protein P-II for glutamine synthetase, at 2,552,875 to 2,553,213
_02445
ECD_02446: ECD_02446 - response regulator regulating glmY sRNA in two-component system with sensor protein GlrK, at 2,553,274 to 2,554,608
_02446
Position (kb)
2552
2553
2554 Strain fitness (log2 ratio)
-1
0
1
2 at 2551.922 kb on + strand, within ECD_02444 at 2552.009 kb on + strand, within ECD_02444 at 2552.016 kb on + strand, within ECD_02444 at 2552.016 kb on + strand, within ECD_02444 at 2552.016 kb on + strand, within ECD_02444 at 2552.028 kb on + strand, within ECD_02444 at 2552.028 kb on + strand, within ECD_02444 at 2552.033 kb on - strand, within ECD_02444 at 2552.054 kb on + strand, within ECD_02444 at 2552.293 kb on + strand, within ECD_02444 at 2552.326 kb on - strand, within ECD_02444 at 2552.763 kb on + strand at 2552.766 kb on + strand at 2552.828 kb on + strand at 2552.947 kb on - strand, within ECD_02445 at 2553.061 kb on - strand, within ECD_02445 at 2553.061 kb on - strand, within ECD_02445 at 2553.061 kb on - strand, within ECD_02445 at 2553.062 kb on + strand, within ECD_02445 at 2553.062 kb on + strand, within ECD_02445 at 2553.063 kb on - strand, within ECD_02445 at 2553.063 kb on - strand, within ECD_02445 at 2553.252 kb on - strand at 2553.264 kb on + strand at 2553.265 kb on - strand at 2553.265 kb on - strand at 2553.265 kb on - strand at 2553.404 kb on + strand at 2553.404 kb on + strand at 2553.597 kb on + strand, within ECD_02446 at 2553.621 kb on + strand, within ECD_02446 at 2553.621 kb on + strand, within ECD_02446 at 2553.622 kb on - strand, within ECD_02446 at 2553.729 kb on - strand, within ECD_02446 at 2553.843 kb on + strand, within ECD_02446 at 2554.036 kb on - strand, within ECD_02446 at 2554.036 kb on - strand, within ECD_02446 at 2554.039 kb on - strand, within ECD_02446 at 2554.039 kb on - strand, within ECD_02446 at 2554.044 kb on + strand, within ECD_02446 at 2554.044 kb on + strand, within ECD_02446 at 2554.057 kb on - strand, within ECD_02446
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 2,551,922 + ECD_02444 0.24 +0.0 2,552,009 + ECD_02444 0.31 -0.4 2,552,016 + ECD_02444 0.32 -0.6 2,552,016 + ECD_02444 0.32 +0.6 2,552,016 + ECD_02444 0.32 -1.0 2,552,028 + ECD_02444 0.33 -1.2 2,552,028 + ECD_02444 0.33 +0.2 2,552,033 - ECD_02444 0.33 -0.0 2,552,054 + ECD_02444 0.35 -0.3 2,552,293 + ECD_02444 0.55 +0.5 2,552,326 - ECD_02444 0.58 +0.5 2,552,763 + +0.2 2,552,766 + -1.0 2,552,828 + +0.0 2,552,947 - ECD_02445 0.21 +0.0 2,553,061 - ECD_02445 0.55 +1.4 2,553,061 - ECD_02445 0.55 +1.0 2,553,061 - ECD_02445 0.55 +1.1 2,553,062 + ECD_02445 0.55 +1.9 2,553,062 + ECD_02445 0.55 +1.1 2,553,063 - ECD_02445 0.55 +1.1 2,553,063 - ECD_02445 0.55 -0.2 2,553,252 - -0.9 2,553,264 + -0.6 2,553,265 - -1.6 2,553,265 - -0.8 2,553,265 - +1.4 2,553,404 + +1.3 2,553,404 + +0.3 2,553,597 + ECD_02446 0.24 +0.6 2,553,621 + ECD_02446 0.26 +0.5 2,553,621 + ECD_02446 0.26 +0.5 2,553,622 - ECD_02446 0.26 +1.1 2,553,729 - ECD_02446 0.34 +1.0 2,553,843 + ECD_02446 0.43 +0.3 2,554,036 - ECD_02446 0.57 +1.4 2,554,036 - ECD_02446 0.57 +0.2 2,554,039 - ECD_02446 0.57 +0.1 2,554,039 - ECD_02446 0.57 +0.5 2,554,044 + ECD_02446 0.58 +0.6 2,554,044 + ECD_02446 0.58 +0.2 2,554,057 - ECD_02446 0.59 +0.9
Or see this region's nucleotide sequence