Strain Fitness in Escherichia coli BL21 around ECD_02445

Experiment: Ox4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02444 and ECD_02445 are separated by 44 nucleotidesECD_02445 and ECD_02446 are separated by 60 nucleotides ECD_02444: ECD_02444 - fused nitric oxide dioxygenase/dihydropteridine reductase 2, at 2,551,640 to 2,552,830 _02444 ECD_02445: ECD_02445 - regulatory protein P-II for glutamine synthetase, at 2,552,875 to 2,553,213 _02445 ECD_02446: ECD_02446 - response regulator regulating glmY sRNA in two-component system with sensor protein GlrK, at 2,553,274 to 2,554,608 _02446 Position (kb) 2552 2553 2554Strain fitness (log2 ratio) -1 0 1 2at 2551.922 kb on + strand, within ECD_02444at 2552.009 kb on + strand, within ECD_02444at 2552.016 kb on + strand, within ECD_02444at 2552.016 kb on + strand, within ECD_02444at 2552.016 kb on + strand, within ECD_02444at 2552.028 kb on + strand, within ECD_02444at 2552.028 kb on + strand, within ECD_02444at 2552.033 kb on - strand, within ECD_02444at 2552.054 kb on + strand, within ECD_02444at 2552.293 kb on + strand, within ECD_02444at 2552.326 kb on - strand, within ECD_02444at 2552.763 kb on + strandat 2552.766 kb on + strandat 2552.828 kb on + strandat 2552.947 kb on - strand, within ECD_02445at 2553.061 kb on - strand, within ECD_02445at 2553.061 kb on - strand, within ECD_02445at 2553.061 kb on - strand, within ECD_02445at 2553.062 kb on + strand, within ECD_02445at 2553.062 kb on + strand, within ECD_02445at 2553.063 kb on - strand, within ECD_02445at 2553.063 kb on - strand, within ECD_02445at 2553.252 kb on - strandat 2553.264 kb on + strandat 2553.265 kb on - strandat 2553.265 kb on - strandat 2553.265 kb on - strandat 2553.404 kb on + strandat 2553.404 kb on + strandat 2553.597 kb on + strand, within ECD_02446at 2553.621 kb on + strand, within ECD_02446at 2553.621 kb on + strand, within ECD_02446at 2553.622 kb on - strand, within ECD_02446at 2553.729 kb on - strand, within ECD_02446at 2553.843 kb on + strand, within ECD_02446at 2554.036 kb on - strand, within ECD_02446at 2554.036 kb on - strand, within ECD_02446at 2554.039 kb on - strand, within ECD_02446at 2554.039 kb on - strand, within ECD_02446at 2554.044 kb on + strand, within ECD_02446at 2554.044 kb on + strand, within ECD_02446at 2554.057 kb on - strand, within ECD_02446

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Per-strain Table

Position Strand Gene LocusTag Fraction Ox4
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2,551,922 + ECD_02444 0.24 +0.0
2,552,009 + ECD_02444 0.31 -0.4
2,552,016 + ECD_02444 0.32 -0.6
2,552,016 + ECD_02444 0.32 +0.6
2,552,016 + ECD_02444 0.32 -1.0
2,552,028 + ECD_02444 0.33 -1.2
2,552,028 + ECD_02444 0.33 +0.2
2,552,033 - ECD_02444 0.33 -0.0
2,552,054 + ECD_02444 0.35 -0.3
2,552,293 + ECD_02444 0.55 +0.5
2,552,326 - ECD_02444 0.58 +0.5
2,552,763 + +0.2
2,552,766 + -1.0
2,552,828 + +0.0
2,552,947 - ECD_02445 0.21 +0.0
2,553,061 - ECD_02445 0.55 +1.4
2,553,061 - ECD_02445 0.55 +1.0
2,553,061 - ECD_02445 0.55 +1.1
2,553,062 + ECD_02445 0.55 +1.9
2,553,062 + ECD_02445 0.55 +1.1
2,553,063 - ECD_02445 0.55 +1.1
2,553,063 - ECD_02445 0.55 -0.2
2,553,252 - -0.9
2,553,264 + -0.6
2,553,265 - -1.6
2,553,265 - -0.8
2,553,265 - +1.4
2,553,404 + +1.3
2,553,404 + +0.3
2,553,597 + ECD_02446 0.24 +0.6
2,553,621 + ECD_02446 0.26 +0.5
2,553,621 + ECD_02446 0.26 +0.5
2,553,622 - ECD_02446 0.26 +1.1
2,553,729 - ECD_02446 0.34 +1.0
2,553,843 + ECD_02446 0.43 +0.3
2,554,036 - ECD_02446 0.57 +1.4
2,554,036 - ECD_02446 0.57 +0.2
2,554,039 - ECD_02446 0.57 +0.1
2,554,039 - ECD_02446 0.57 +0.5
2,554,044 + ECD_02446 0.58 +0.6
2,554,044 + ECD_02446 0.58 +0.2
2,554,057 - ECD_02446 0.59 +0.9

Or see this region's nucleotide sequence