Strain Fitness in Escherichia coli BL21 around ECD_02290

Experiment: Ox4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02289 and ECD_02290 are separated by 376 nucleotidesECD_02290 and ECD_02291 are separated by 14 nucleotidesECD_02291 and ECD_02292 are separated by 12 nucleotides ECD_02289: ECD_02289 - glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase, at 2,374,942 to 2,376,180 _02289 ECD_02290: ECD_02290 - sensor kinase regulating yhjX; pyruvate-responsive YpdAB two-component system, at 2,376,557 to 2,378,254 _02290 ECD_02291: ECD_02291 - response regulator activating yhjX; pyruvate-responsive YpdAB two-component system, at 2,378,269 to 2,379,003 _02291 ECD_02292: ECD_02292 - putative DNA-binding protein, at 2,379,016 to 2,379,873 _02292 Position (kb) 2376 2377 2378 2379Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2375.776 kb on - strand, within ECD_02289at 2375.776 kb on - strand, within ECD_02289at 2375.776 kb on - strand, within ECD_02289at 2376.022 kb on - strand, within ECD_02289at 2376.118 kb on - strandat 2376.437 kb on - strandat 2376.527 kb on + strandat 2376.528 kb on - strandat 2376.614 kb on - strandat 2376.775 kb on - strand, within ECD_02290at 2376.775 kb on - strand, within ECD_02290at 2376.775 kb on - strand, within ECD_02290at 2376.775 kb on - strand, within ECD_02290at 2376.775 kb on - strand, within ECD_02290at 2376.778 kb on + strand, within ECD_02290at 2376.779 kb on - strand, within ECD_02290at 2376.779 kb on - strand, within ECD_02290at 2376.925 kb on + strand, within ECD_02290at 2377.069 kb on + strand, within ECD_02290at 2377.115 kb on - strand, within ECD_02290at 2377.294 kb on + strand, within ECD_02290at 2377.298 kb on - strand, within ECD_02290at 2377.319 kb on + strand, within ECD_02290at 2377.320 kb on - strand, within ECD_02290at 2377.339 kb on + strand, within ECD_02290at 2377.340 kb on - strand, within ECD_02290at 2377.340 kb on - strand, within ECD_02290at 2377.340 kb on - strand, within ECD_02290at 2377.344 kb on - strand, within ECD_02290at 2377.530 kb on + strand, within ECD_02290at 2377.612 kb on - strand, within ECD_02290at 2377.832 kb on + strand, within ECD_02290at 2377.832 kb on + strand, within ECD_02290at 2377.832 kb on + strand, within ECD_02290at 2377.880 kb on + strand, within ECD_02290at 2377.880 kb on + strand, within ECD_02290at 2377.880 kb on + strand, within ECD_02290at 2377.881 kb on - strand, within ECD_02290at 2377.881 kb on - strand, within ECD_02290at 2378.142 kb on + strandat 2378.202 kb on - strandat 2378.265 kb on + strandat 2378.433 kb on + strand, within ECD_02291at 2378.434 kb on - strand, within ECD_02291at 2378.731 kb on - strand, within ECD_02291at 2378.734 kb on + strand, within ECD_02291at 2378.734 kb on + strand, within ECD_02291at 2378.734 kb on + strand, within ECD_02291at 2378.789 kb on - strand, within ECD_02291at 2378.917 kb on + strand, within ECD_02291at 2378.917 kb on + strand, within ECD_02291at 2379.147 kb on - strand, within ECD_02292at 2379.147 kb on - strand, within ECD_02292at 2379.246 kb on + strand, within ECD_02292

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Per-strain Table

Position Strand Gene LocusTag Fraction Ox4
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2,375,776 - ECD_02289 0.67 -0.1
2,375,776 - ECD_02289 0.67 +0.0
2,375,776 - ECD_02289 0.67 +0.6
2,376,022 - ECD_02289 0.87 +0.1
2,376,118 - +0.5
2,376,437 - +0.5
2,376,527 + +0.2
2,376,528 - -0.7
2,376,614 - +1.1
2,376,775 - ECD_02290 0.13 +3.4
2,376,775 - ECD_02290 0.13 +0.0
2,376,775 - ECD_02290 0.13 +0.7
2,376,775 - ECD_02290 0.13 +0.2
2,376,775 - ECD_02290 0.13 -3.0
2,376,778 + ECD_02290 0.13 +0.7
2,376,779 - ECD_02290 0.13 -0.0
2,376,779 - ECD_02290 0.13 +0.3
2,376,925 + ECD_02290 0.22 -0.0
2,377,069 + ECD_02290 0.30 +0.5
2,377,115 - ECD_02290 0.33 +0.3
2,377,294 + ECD_02290 0.43 -0.4
2,377,298 - ECD_02290 0.44 +1.5
2,377,319 + ECD_02290 0.45 +1.0
2,377,320 - ECD_02290 0.45 -0.8
2,377,339 + ECD_02290 0.46 +0.2
2,377,340 - ECD_02290 0.46 +1.2
2,377,340 - ECD_02290 0.46 +0.7
2,377,340 - ECD_02290 0.46 -0.0
2,377,344 - ECD_02290 0.46 -1.5
2,377,530 + ECD_02290 0.57 +0.8
2,377,612 - ECD_02290 0.62 +0.7
2,377,832 + ECD_02290 0.75 +1.6
2,377,832 + ECD_02290 0.75 +0.3
2,377,832 + ECD_02290 0.75 +1.1
2,377,880 + ECD_02290 0.78 +1.3
2,377,880 + ECD_02290 0.78 -1.8
2,377,880 + ECD_02290 0.78 +0.3
2,377,881 - ECD_02290 0.78 -0.2
2,377,881 - ECD_02290 0.78 -0.2
2,378,142 + -0.1
2,378,202 - +0.1
2,378,265 + +1.5
2,378,433 + ECD_02291 0.22 +0.0
2,378,434 - ECD_02291 0.22 +0.7
2,378,731 - ECD_02291 0.63 -1.4
2,378,734 + ECD_02291 0.63 +0.2
2,378,734 + ECD_02291 0.63 +1.6
2,378,734 + ECD_02291 0.63 +0.5
2,378,789 - ECD_02291 0.71 -0.1
2,378,917 + ECD_02291 0.88 +0.8
2,378,917 + ECD_02291 0.88 +0.5
2,379,147 - ECD_02292 0.15 +0.4
2,379,147 - ECD_02292 0.15 +1.0
2,379,246 + ECD_02292 0.27 -0.5

Or see this region's nucleotide sequence