Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02289 and ECD_02290 are separated by 376 nucleotides ECD_02290 and ECD_02291 are separated by 14 nucleotides ECD_02291 and ECD_02292 are separated by 12 nucleotides
ECD_02289: ECD_02289 - glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase, at 2,374,942 to 2,376,180
_02289
ECD_02290: ECD_02290 - sensor kinase regulating yhjX; pyruvate-responsive YpdAB two-component system, at 2,376,557 to 2,378,254
_02290
ECD_02291: ECD_02291 - response regulator activating yhjX; pyruvate-responsive YpdAB two-component system, at 2,378,269 to 2,379,003
_02291
ECD_02292: ECD_02292 - putative DNA-binding protein, at 2,379,016 to 2,379,873
_02292
Position (kb)
2376
2377
2378
2379 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2375.776 kb on - strand, within ECD_02289 at 2375.776 kb on - strand, within ECD_02289 at 2375.776 kb on - strand, within ECD_02289 at 2376.022 kb on - strand, within ECD_02289 at 2376.118 kb on - strand at 2376.437 kb on - strand at 2376.527 kb on + strand at 2376.528 kb on - strand at 2376.614 kb on - strand at 2376.775 kb on - strand, within ECD_02290 at 2376.775 kb on - strand, within ECD_02290 at 2376.775 kb on - strand, within ECD_02290 at 2376.775 kb on - strand, within ECD_02290 at 2376.775 kb on - strand, within ECD_02290 at 2376.778 kb on + strand, within ECD_02290 at 2376.779 kb on - strand, within ECD_02290 at 2376.779 kb on - strand, within ECD_02290 at 2376.925 kb on + strand, within ECD_02290 at 2377.069 kb on + strand, within ECD_02290 at 2377.115 kb on - strand, within ECD_02290 at 2377.294 kb on + strand, within ECD_02290 at 2377.298 kb on - strand, within ECD_02290 at 2377.319 kb on + strand, within ECD_02290 at 2377.320 kb on - strand, within ECD_02290 at 2377.339 kb on + strand, within ECD_02290 at 2377.340 kb on - strand, within ECD_02290 at 2377.340 kb on - strand, within ECD_02290 at 2377.340 kb on - strand, within ECD_02290 at 2377.344 kb on - strand, within ECD_02290 at 2377.530 kb on + strand, within ECD_02290 at 2377.612 kb on - strand, within ECD_02290 at 2377.832 kb on + strand, within ECD_02290 at 2377.832 kb on + strand, within ECD_02290 at 2377.832 kb on + strand, within ECD_02290 at 2377.880 kb on + strand, within ECD_02290 at 2377.880 kb on + strand, within ECD_02290 at 2377.880 kb on + strand, within ECD_02290 at 2377.881 kb on - strand, within ECD_02290 at 2377.881 kb on - strand, within ECD_02290 at 2378.142 kb on + strand at 2378.202 kb on - strand at 2378.265 kb on + strand at 2378.433 kb on + strand, within ECD_02291 at 2378.434 kb on - strand, within ECD_02291 at 2378.731 kb on - strand, within ECD_02291 at 2378.734 kb on + strand, within ECD_02291 at 2378.734 kb on + strand, within ECD_02291 at 2378.734 kb on + strand, within ECD_02291 at 2378.789 kb on - strand, within ECD_02291 at 2378.917 kb on + strand, within ECD_02291 at 2378.917 kb on + strand, within ECD_02291 at 2379.147 kb on - strand, within ECD_02292 at 2379.147 kb on - strand, within ECD_02292 at 2379.246 kb on + strand, within ECD_02292
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 2,375,776 - ECD_02289 0.67 -0.1 2,375,776 - ECD_02289 0.67 +0.0 2,375,776 - ECD_02289 0.67 +0.6 2,376,022 - ECD_02289 0.87 +0.1 2,376,118 - +0.5 2,376,437 - +0.5 2,376,527 + +0.2 2,376,528 - -0.7 2,376,614 - +1.1 2,376,775 - ECD_02290 0.13 +3.4 2,376,775 - ECD_02290 0.13 +0.0 2,376,775 - ECD_02290 0.13 +0.7 2,376,775 - ECD_02290 0.13 +0.2 2,376,775 - ECD_02290 0.13 -3.0 2,376,778 + ECD_02290 0.13 +0.7 2,376,779 - ECD_02290 0.13 -0.0 2,376,779 - ECD_02290 0.13 +0.3 2,376,925 + ECD_02290 0.22 -0.0 2,377,069 + ECD_02290 0.30 +0.5 2,377,115 - ECD_02290 0.33 +0.3 2,377,294 + ECD_02290 0.43 -0.4 2,377,298 - ECD_02290 0.44 +1.5 2,377,319 + ECD_02290 0.45 +1.0 2,377,320 - ECD_02290 0.45 -0.8 2,377,339 + ECD_02290 0.46 +0.2 2,377,340 - ECD_02290 0.46 +1.2 2,377,340 - ECD_02290 0.46 +0.7 2,377,340 - ECD_02290 0.46 -0.0 2,377,344 - ECD_02290 0.46 -1.5 2,377,530 + ECD_02290 0.57 +0.8 2,377,612 - ECD_02290 0.62 +0.7 2,377,832 + ECD_02290 0.75 +1.6 2,377,832 + ECD_02290 0.75 +0.3 2,377,832 + ECD_02290 0.75 +1.1 2,377,880 + ECD_02290 0.78 +1.3 2,377,880 + ECD_02290 0.78 -1.8 2,377,880 + ECD_02290 0.78 +0.3 2,377,881 - ECD_02290 0.78 -0.2 2,377,881 - ECD_02290 0.78 -0.2 2,378,142 + -0.1 2,378,202 - +0.1 2,378,265 + +1.5 2,378,433 + ECD_02291 0.22 +0.0 2,378,434 - ECD_02291 0.22 +0.7 2,378,731 - ECD_02291 0.63 -1.4 2,378,734 + ECD_02291 0.63 +0.2 2,378,734 + ECD_02291 0.63 +1.6 2,378,734 + ECD_02291 0.63 +0.5 2,378,789 - ECD_02291 0.71 -0.1 2,378,917 + ECD_02291 0.88 +0.8 2,378,917 + ECD_02291 0.88 +0.5 2,379,147 - ECD_02292 0.15 +0.4 2,379,147 - ECD_02292 0.15 +1.0 2,379,246 + ECD_02292 0.27 -0.5
Or see this region's nucleotide sequence