Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02273 and ECD_t00038 are separated by 75 nucleotides ECD_t00038 and ECD_02274 are separated by 95 nucleotides ECD_02274 and ECD_02275 are separated by 217 nucleotides
ECD_02273: ECD_02273 - putative inner membrane protein, at 2,353,404 to 2,354,336
_02273
ECD_t00038: ECD_t00038 - tRNA-Arg, at 2,354,412 to 2,354,486
_t00038
ECD_02274: ECD_02274 - dsd operon activator; autorepressor, at 2,354,582 to 2,355,517
_02274
ECD_02275: ECD_02275 - D-serine transporter, at 2,355,735 to 2,357,072
_02275
Position (kb)
2354
2355
2356 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2353.624 kb on + strand, within ECD_02273 at 2353.698 kb on - strand, within ECD_02273 at 2353.811 kb on + strand, within ECD_02273 at 2353.812 kb on - strand, within ECD_02273 at 2353.813 kb on + strand, within ECD_02273 at 2353.814 kb on - strand, within ECD_02273 at 2353.859 kb on + strand, within ECD_02273 at 2353.881 kb on + strand, within ECD_02273 at 2353.883 kb on + strand, within ECD_02273 at 2353.883 kb on + strand, within ECD_02273 at 2353.884 kb on - strand, within ECD_02273 at 2353.884 kb on - strand, within ECD_02273 at 2354.003 kb on + strand, within ECD_02273 at 2354.004 kb on - strand, within ECD_02273 at 2354.004 kb on - strand, within ECD_02273 at 2354.051 kb on + strand, within ECD_02273 at 2354.181 kb on - strand, within ECD_02273 at 2354.369 kb on + strand at 2354.419 kb on + strand at 2354.423 kb on + strand, within ECD_t00038 at 2354.447 kb on + strand, within ECD_t00038 at 2354.448 kb on - strand, within ECD_t00038 at 2354.504 kb on - strand at 2354.667 kb on + strand at 2354.792 kb on - strand, within ECD_02274 at 2354.866 kb on + strand, within ECD_02274 at 2354.866 kb on + strand, within ECD_02274 at 2354.924 kb on - strand, within ECD_02274 at 2354.974 kb on - strand, within ECD_02274 at 2354.988 kb on - strand, within ECD_02274 at 2354.988 kb on - strand, within ECD_02274 at 2354.988 kb on - strand, within ECD_02274 at 2354.988 kb on - strand, within ECD_02274 at 2355.055 kb on - strand, within ECD_02274 at 2355.055 kb on - strand, within ECD_02274 at 2355.055 kb on - strand, within ECD_02274 at 2355.055 kb on - strand, within ECD_02274 at 2355.152 kb on + strand, within ECD_02274 at 2355.273 kb on - strand, within ECD_02274 at 2355.381 kb on - strand, within ECD_02274 at 2355.734 kb on + strand at 2355.784 kb on + strand at 2356.153 kb on + strand, within ECD_02275 at 2356.178 kb on + strand, within ECD_02275 at 2356.228 kb on + strand, within ECD_02275 at 2356.230 kb on + strand, within ECD_02275 at 2356.231 kb on - strand, within ECD_02275 at 2356.231 kb on - strand, within ECD_02275 at 2356.242 kb on - strand, within ECD_02275 at 2356.439 kb on - strand, within ECD_02275 at 2356.445 kb on - strand, within ECD_02275 at 2356.510 kb on - strand, within ECD_02275
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 2,353,624 + ECD_02273 0.24 -0.1 2,353,698 - ECD_02273 0.32 +0.5 2,353,811 + ECD_02273 0.44 +0.1 2,353,812 - ECD_02273 0.44 +1.6 2,353,813 + ECD_02273 0.44 +0.5 2,353,814 - ECD_02273 0.44 +0.5 2,353,859 + ECD_02273 0.49 +0.8 2,353,881 + ECD_02273 0.51 -1.6 2,353,883 + ECD_02273 0.51 -0.8 2,353,883 + ECD_02273 0.51 +0.4 2,353,884 - ECD_02273 0.51 -0.2 2,353,884 - ECD_02273 0.51 -0.9 2,354,003 + ECD_02273 0.64 -1.0 2,354,004 - ECD_02273 0.64 +1.3 2,354,004 - ECD_02273 0.64 -0.6 2,354,051 + ECD_02273 0.69 -1.9 2,354,181 - ECD_02273 0.83 -0.7 2,354,369 + +0.3 2,354,419 + +1.7 2,354,423 + ECD_t00038 0.15 +2.0 2,354,447 + ECD_t00038 0.47 +1.4 2,354,448 - ECD_t00038 0.48 +3.2 2,354,504 - +0.7 2,354,667 + +0.2 2,354,792 - ECD_02274 0.22 -0.6 2,354,866 + ECD_02274 0.30 +0.9 2,354,866 + ECD_02274 0.30 +0.7 2,354,924 - ECD_02274 0.37 +0.8 2,354,974 - ECD_02274 0.42 +0.3 2,354,988 - ECD_02274 0.43 +0.6 2,354,988 - ECD_02274 0.43 +0.9 2,354,988 - ECD_02274 0.43 +0.3 2,354,988 - ECD_02274 0.43 -0.1 2,355,055 - ECD_02274 0.51 +1.5 2,355,055 - ECD_02274 0.51 -0.4 2,355,055 - ECD_02274 0.51 -0.2 2,355,055 - ECD_02274 0.51 +1.1 2,355,152 + ECD_02274 0.61 -1.1 2,355,273 - ECD_02274 0.74 +1.2 2,355,381 - ECD_02274 0.85 +0.4 2,355,734 + +0.7 2,355,784 + -1.0 2,356,153 + ECD_02275 0.31 +0.9 2,356,178 + ECD_02275 0.33 -1.8 2,356,228 + ECD_02275 0.37 +0.5 2,356,230 + ECD_02275 0.37 -0.5 2,356,231 - ECD_02275 0.37 +0.3 2,356,231 - ECD_02275 0.37 -0.1 2,356,242 - ECD_02275 0.38 -1.7 2,356,439 - ECD_02275 0.53 +0.5 2,356,445 - ECD_02275 0.53 +1.0 2,356,510 - ECD_02275 0.58 +1.0
Or see this region's nucleotide sequence