Strain Fitness in Escherichia coli BL21 around ECD_02274

Experiment: Ox4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02273 and ECD_t00038 are separated by 75 nucleotidesECD_t00038 and ECD_02274 are separated by 95 nucleotidesECD_02274 and ECD_02275 are separated by 217 nucleotides ECD_02273: ECD_02273 - putative inner membrane protein, at 2,353,404 to 2,354,336 _02273 ECD_t00038: ECD_t00038 - tRNA-Arg, at 2,354,412 to 2,354,486 _t00038 ECD_02274: ECD_02274 - dsd operon activator; autorepressor, at 2,354,582 to 2,355,517 _02274 ECD_02275: ECD_02275 - D-serine transporter, at 2,355,735 to 2,357,072 _02275 Position (kb) 2354 2355 2356Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2353.624 kb on + strand, within ECD_02273at 2353.698 kb on - strand, within ECD_02273at 2353.811 kb on + strand, within ECD_02273at 2353.812 kb on - strand, within ECD_02273at 2353.813 kb on + strand, within ECD_02273at 2353.814 kb on - strand, within ECD_02273at 2353.859 kb on + strand, within ECD_02273at 2353.881 kb on + strand, within ECD_02273at 2353.883 kb on + strand, within ECD_02273at 2353.883 kb on + strand, within ECD_02273at 2353.884 kb on - strand, within ECD_02273at 2353.884 kb on - strand, within ECD_02273at 2354.003 kb on + strand, within ECD_02273at 2354.004 kb on - strand, within ECD_02273at 2354.004 kb on - strand, within ECD_02273at 2354.051 kb on + strand, within ECD_02273at 2354.181 kb on - strand, within ECD_02273at 2354.369 kb on + strandat 2354.419 kb on + strandat 2354.423 kb on + strand, within ECD_t00038at 2354.447 kb on + strand, within ECD_t00038at 2354.448 kb on - strand, within ECD_t00038at 2354.504 kb on - strandat 2354.667 kb on + strandat 2354.792 kb on - strand, within ECD_02274at 2354.866 kb on + strand, within ECD_02274at 2354.866 kb on + strand, within ECD_02274at 2354.924 kb on - strand, within ECD_02274at 2354.974 kb on - strand, within ECD_02274at 2354.988 kb on - strand, within ECD_02274at 2354.988 kb on - strand, within ECD_02274at 2354.988 kb on - strand, within ECD_02274at 2354.988 kb on - strand, within ECD_02274at 2355.055 kb on - strand, within ECD_02274at 2355.055 kb on - strand, within ECD_02274at 2355.055 kb on - strand, within ECD_02274at 2355.055 kb on - strand, within ECD_02274at 2355.152 kb on + strand, within ECD_02274at 2355.273 kb on - strand, within ECD_02274at 2355.381 kb on - strand, within ECD_02274at 2355.734 kb on + strandat 2355.784 kb on + strandat 2356.153 kb on + strand, within ECD_02275at 2356.178 kb on + strand, within ECD_02275at 2356.228 kb on + strand, within ECD_02275at 2356.230 kb on + strand, within ECD_02275at 2356.231 kb on - strand, within ECD_02275at 2356.231 kb on - strand, within ECD_02275at 2356.242 kb on - strand, within ECD_02275at 2356.439 kb on - strand, within ECD_02275at 2356.445 kb on - strand, within ECD_02275at 2356.510 kb on - strand, within ECD_02275

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Per-strain Table

Position Strand Gene LocusTag Fraction Ox4
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2,353,624 + ECD_02273 0.24 -0.1
2,353,698 - ECD_02273 0.32 +0.5
2,353,811 + ECD_02273 0.44 +0.1
2,353,812 - ECD_02273 0.44 +1.6
2,353,813 + ECD_02273 0.44 +0.5
2,353,814 - ECD_02273 0.44 +0.5
2,353,859 + ECD_02273 0.49 +0.8
2,353,881 + ECD_02273 0.51 -1.6
2,353,883 + ECD_02273 0.51 -0.8
2,353,883 + ECD_02273 0.51 +0.4
2,353,884 - ECD_02273 0.51 -0.2
2,353,884 - ECD_02273 0.51 -0.9
2,354,003 + ECD_02273 0.64 -1.0
2,354,004 - ECD_02273 0.64 +1.3
2,354,004 - ECD_02273 0.64 -0.6
2,354,051 + ECD_02273 0.69 -1.9
2,354,181 - ECD_02273 0.83 -0.7
2,354,369 + +0.3
2,354,419 + +1.7
2,354,423 + ECD_t00038 0.15 +2.0
2,354,447 + ECD_t00038 0.47 +1.4
2,354,448 - ECD_t00038 0.48 +3.2
2,354,504 - +0.7
2,354,667 + +0.2
2,354,792 - ECD_02274 0.22 -0.6
2,354,866 + ECD_02274 0.30 +0.9
2,354,866 + ECD_02274 0.30 +0.7
2,354,924 - ECD_02274 0.37 +0.8
2,354,974 - ECD_02274 0.42 +0.3
2,354,988 - ECD_02274 0.43 +0.6
2,354,988 - ECD_02274 0.43 +0.9
2,354,988 - ECD_02274 0.43 +0.3
2,354,988 - ECD_02274 0.43 -0.1
2,355,055 - ECD_02274 0.51 +1.5
2,355,055 - ECD_02274 0.51 -0.4
2,355,055 - ECD_02274 0.51 -0.2
2,355,055 - ECD_02274 0.51 +1.1
2,355,152 + ECD_02274 0.61 -1.1
2,355,273 - ECD_02274 0.74 +1.2
2,355,381 - ECD_02274 0.85 +0.4
2,355,734 + +0.7
2,355,784 + -1.0
2,356,153 + ECD_02275 0.31 +0.9
2,356,178 + ECD_02275 0.33 -1.8
2,356,228 + ECD_02275 0.37 +0.5
2,356,230 + ECD_02275 0.37 -0.5
2,356,231 - ECD_02275 0.37 +0.3
2,356,231 - ECD_02275 0.37 -0.1
2,356,242 - ECD_02275 0.38 -1.7
2,356,439 - ECD_02275 0.53 +0.5
2,356,445 - ECD_02275 0.53 +1.0
2,356,510 - ECD_02275 0.58 +1.0

Or see this region's nucleotide sequence