Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02114 and ECD_02115 are separated by 124 nucleotides ECD_02115 and ECD_02116 are separated by 138 nucleotides ECD_02116 and ECD_02117 are separated by 181 nucleotides ECD_02117 and ECD_02118 are separated by 19 nucleotides
ECD_02114: ECD_02114 - putative ATP-dependent DNA or RNA helicase, at 2,175,481 to 2,177,241
_02114
ECD_02115: ECD_02115 - 50S ribosomal subunit protein L25, at 2,177,366 to 2,177,650
_02115
ECD_02116: ECD_02116 - spermidine nucleoid-associated protein, at 2,177,789 to 2,178,796
_02116
ECD_02117: ECD_02117 - UPF0352 family protein, at 2,178,978 to 2,179,205
_02117
ECD_02118: ECD_02118 - essential inner membrane DUF3413 domain-containing protein; lipid A production and membrane permeability factor, at 2,179,225 to 2,180,985
_02118
Position (kb)
2177
2178
2179 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2176.860 kb on + strand, within ECD_02114 at 2176.860 kb on + strand, within ECD_02114 at 2176.969 kb on + strand, within ECD_02114 at 2177.246 kb on - strand at 2177.895 kb on - strand, within ECD_02116 at 2177.915 kb on - strand, within ECD_02116 at 2178.111 kb on + strand, within ECD_02116 at 2178.112 kb on - strand, within ECD_02116 at 2178.115 kb on + strand, within ECD_02116 at 2178.116 kb on - strand, within ECD_02116 at 2178.116 kb on - strand, within ECD_02116 at 2178.116 kb on - strand, within ECD_02116 at 2178.116 kb on - strand, within ECD_02116 at 2178.118 kb on - strand, within ECD_02116 at 2178.118 kb on - strand, within ECD_02116 at 2178.591 kb on - strand, within ECD_02116 at 2178.758 kb on - strand at 2178.800 kb on - strand at 2178.811 kb on + strand at 2178.812 kb on - strand at 2178.855 kb on - strand at 2178.942 kb on + strand at 2178.977 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 2,176,860 + ECD_02114 0.78 -0.0 2,176,860 + ECD_02114 0.78 -0.8 2,176,969 + ECD_02114 0.84 +1.0 2,177,246 - +0.9 2,177,895 - ECD_02116 0.11 -3.0 2,177,915 - ECD_02116 0.12 -0.6 2,178,111 + ECD_02116 0.32 -0.3 2,178,112 - ECD_02116 0.32 -1.2 2,178,115 + ECD_02116 0.32 -0.8 2,178,116 - ECD_02116 0.32 -1.3 2,178,116 - ECD_02116 0.32 -1.8 2,178,116 - ECD_02116 0.32 -0.2 2,178,116 - ECD_02116 0.32 -0.2 2,178,118 - ECD_02116 0.33 +0.2 2,178,118 - ECD_02116 0.33 -0.8 2,178,591 - ECD_02116 0.80 -1.2 2,178,758 - -0.4 2,178,800 - -1.9 2,178,811 + -1.5 2,178,812 - -0.7 2,178,855 - +0.7 2,178,942 + -0.3 2,178,977 + -1.2
Or see this region's nucleotide sequence