Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01964 and ECD_01965 are separated by 2 nucleotides ECD_01965 and ECD_01966 are separated by 92 nucleotides ECD_01966 and ECD_01967 are separated by 2 nucleotides ECD_01967 and ECD_01968 are separated by 5 nucleotides
ECD_01964: ECD_01964 - putative acyl transferase, at 2,031,074 to 2,031,562
_01964
ECD_01965: ECD_01965 - putative glycosyl transferase, at 2,031,565 to 2,032,404
_01965
ECD_01966: ECD_01966 - colanic acid production tyrosine-protein kinase; autokinase; Ugd phosphorylase, at 2,032,497 to 2,034,659
_01966
ECD_01967: ECD_01967 - colanic acid production protein-tyrosine-phosphatase; Wzc-P dephosphorylase, at 2,034,662 to 2,035,105
_01967
ECD_01968: ECD_01968 - colanic acid export protein; outer membrane auxillary lipoprotein, at 2,035,111 to 2,036,250
_01968
Position (kb)
2032
2033
2034
2035 Strain fitness (log2 ratio)
-1
0
1 at 2031.509 kb on + strand, within ECD_01964 at 2031.642 kb on + strand at 2031.643 kb on - strand at 2031.942 kb on + strand, within ECD_01965 at 2031.972 kb on - strand, within ECD_01965 at 2032.046 kb on + strand, within ECD_01965 at 2032.141 kb on - strand, within ECD_01965 at 2032.173 kb on + strand, within ECD_01965 at 2032.219 kb on - strand, within ECD_01965 at 2032.374 kb on + strand at 2032.376 kb on + strand at 2032.376 kb on + strand at 2032.377 kb on - strand at 2032.422 kb on + strand at 2032.753 kb on + strand, within ECD_01966 at 2032.872 kb on - strand, within ECD_01966 at 2033.260 kb on + strand, within ECD_01966 at 2033.261 kb on - strand, within ECD_01966 at 2033.501 kb on + strand, within ECD_01966 at 2033.824 kb on - strand, within ECD_01966 at 2033.902 kb on + strand, within ECD_01966 at 2034.060 kb on - strand, within ECD_01966 at 2034.663 kb on + strand at 2034.880 kb on - strand, within ECD_01967 at 2035.089 kb on - strand at 2035.099 kb on + strand at 2035.164 kb on + strand at 2035.224 kb on - strand at 2035.236 kb on - strand, within ECD_01968 at 2035.298 kb on + strand, within ECD_01968 at 2035.302 kb on + strand, within ECD_01968
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 2,031,509 + ECD_01964 0.89 +0.2 2,031,642 + +0.9 2,031,643 - -0.5 2,031,942 + ECD_01965 0.45 -0.2 2,031,972 - ECD_01965 0.48 -0.5 2,032,046 + ECD_01965 0.57 +1.6 2,032,141 - ECD_01965 0.69 +0.2 2,032,173 + ECD_01965 0.72 -0.1 2,032,219 - ECD_01965 0.78 -1.1 2,032,374 + -0.8 2,032,376 + +0.4 2,032,376 + -0.8 2,032,377 - -1.3 2,032,422 + +0.9 2,032,753 + ECD_01966 0.12 +1.3 2,032,872 - ECD_01966 0.17 +0.1 2,033,260 + ECD_01966 0.35 +1.2 2,033,261 - ECD_01966 0.35 -0.1 2,033,501 + ECD_01966 0.46 -0.4 2,033,824 - ECD_01966 0.61 +0.6 2,033,902 + ECD_01966 0.65 +1.6 2,034,060 - ECD_01966 0.72 -0.2 2,034,663 + +0.1 2,034,880 - ECD_01967 0.49 -0.0 2,035,089 - -1.0 2,035,099 + -1.7 2,035,164 + +0.3 2,035,224 - +0.0 2,035,236 - ECD_01968 0.11 -0.0 2,035,298 + ECD_01968 0.16 +1.3 2,035,302 + ECD_01968 0.17 +0.7
Or see this region's nucleotide sequence