Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01886 and ECD_01887 are separated by 0 nucleotides ECD_01887 and ECD_01888 are separated by 256 nucleotides ECD_01888 and ECD_01889 are separated by 342 nucleotides ECD_01889 and ECD_04329 are separated by 22 nucleotides
ECD_01886: ECD_01886 - membrane-anchored, periplasmic TMAO, DMSO reductase, at 1,944,625 to 1,945,629
_01886
ECD_01887: ECD_01887 - inner membrane heme subunit for periplasmic YedYZ reductase, at 1,945,630 to 1,946,265
_01887
ECD_01888: ECD_01888 - zinc and cadmium binding protein, periplasmic, at 1,946,522 to 1,947,172
_01888
ECD_01889: ECD_01889 - cytochrome b561-like protein, at 1,947,515 to 1,948,045
_01889
ECD_04329: ECD_04329 - hypothetical protein, at 1,948,068 to 1,948,310
_04329
Position (kb) 1946
1947
1948 Strain fitness (log2 ratio) -1
0
1 at 1945.875 kb on - strand, within ECD_01887 at 1946.142 kb on + strand, within ECD_01887 at 1946.200 kb on + strand, within ECD_01887 at 1946.263 kb on + strand at 1946.271 kb on + strand at 1946.557 kb on - strand at 1947.207 kb on + strand at 1947.282 kb on - strand at 1947.619 kb on + strand, within ECD_01889 at 1947.653 kb on + strand, within ECD_01889 at 1947.943 kb on + strand, within ECD_01889 at 1948.009 kb on + strand at 1948.012 kb on + strand at 1948.093 kb on + strand, within ECD_04329
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 1,945,875 - ECD_01887 0.39 +0.0 1,946,142 + ECD_01887 0.81 +0.3 1,946,200 + ECD_01887 0.90 -0.1 1,946,263 + +1.4 1,946,271 + +0.5 1,946,557 - +1.0 1,947,207 + +0.9 1,947,282 - +0.4 1,947,619 + ECD_01889 0.20 +0.4 1,947,653 + ECD_01889 0.26 -0.4 1,947,943 + ECD_01889 0.81 +0.2 1,948,009 + -0.7 1,948,012 + -0.2 1,948,093 + ECD_04329 0.10 -0.8
Or see this region's nucleotide sequence