Strain Fitness in Escherichia coli BL21 around ECD_01873

Experiment: Ox4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01871 and ECD_01872 are separated by 463 nucleotidesECD_01872 and ECD_01873 are separated by 171 nucleotidesECD_01873 and ECD_01874 are separated by 37 nucleotidesECD_01874 and ECD_01875 are separated by 189 nucleotides ECD_01871: ECD_01871 - DUF2766 family protein, at 1,932,649 to 1,932,900 _01871 ECD_01872: ECD_01872 - lipoprotein, function unknown, at 1,933,364 to 1,933,687 _01872 ECD_01873: ECD_01873 - ferritin iron storage protein (cytoplasmic), at 1,933,859 to 1,934,356 _01873 ECD_01874: ECD_01874 - DUF2492 family protein, at 1,934,394 to 1,934,633 _01874 ECD_01875: ECD_01875 - tyrosine transporter, at 1,934,823 to 1,936,034 _01875 Position (kb) 1933 1934 1935Strain fitness (log2 ratio) -2 -1 0 1 2at 1932.934 kb on + strandat 1932.935 kb on - strandat 1932.935 kb on - strandat 1933.066 kb on - strandat 1933.126 kb on - strandat 1933.395 kb on + strandat 1933.411 kb on + strand, within ECD_01872at 1933.411 kb on + strand, within ECD_01872at 1933.459 kb on + strand, within ECD_01872at 1933.459 kb on + strand, within ECD_01872at 1933.464 kb on + strand, within ECD_01872at 1933.836 kb on + strandat 1933.960 kb on + strand, within ECD_01873at 1934.058 kb on + strand, within ECD_01873at 1934.065 kb on + strand, within ECD_01873at 1934.225 kb on + strand, within ECD_01873at 1934.601 kb on - strand, within ECD_01874at 1934.773 kb on - strandat 1934.789 kb on - strandat 1934.927 kb on + strandat 1934.932 kb on + strandat 1935.080 kb on + strand, within ECD_01875at 1935.080 kb on + strand, within ECD_01875at 1935.096 kb on + strand, within ECD_01875at 1935.114 kb on + strand, within ECD_01875at 1935.167 kb on + strand, within ECD_01875

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Per-strain Table

Position Strand Gene LocusTag Fraction Ox4
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1,932,934 + +0.5
1,932,935 - +0.0
1,932,935 - +0.2
1,933,066 - +0.8
1,933,126 - -0.7
1,933,395 + +0.0
1,933,411 + ECD_01872 0.15 -1.0
1,933,411 + ECD_01872 0.15 +0.0
1,933,459 + ECD_01872 0.29 +1.4
1,933,459 + ECD_01872 0.29 +2.5
1,933,464 + ECD_01872 0.31 -0.8
1,933,836 + +0.5
1,933,960 + ECD_01873 0.20 -0.3
1,934,058 + ECD_01873 0.40 -1.9
1,934,065 + ECD_01873 0.41 -0.5
1,934,225 + ECD_01873 0.73 -0.2
1,934,601 - ECD_01874 0.86 +0.6
1,934,773 - -1.0
1,934,789 - -0.7
1,934,927 + +0.1
1,934,932 + -0.5
1,935,080 + ECD_01875 0.21 -1.5
1,935,080 + ECD_01875 0.21 -1.2
1,935,096 + ECD_01875 0.23 -0.6
1,935,114 + ECD_01875 0.24 +1.2
1,935,167 + ECD_01875 0.28 +0.4

Or see this region's nucleotide sequence