Strain Fitness in Escherichia coli BL21 around ECD_01867

Experiment: Ox4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01865 and ECD_01866 overlap by 26 nucleotidesECD_01866 and ECD_01867 are separated by 166 nucleotidesECD_01867 and ECD_01868 are separated by 14 nucleotides ECD_01865: ECD_01865 - trehalose-6-phosphate synthase, at 1,925,330 to 1,926,754 _01865 ECD_01866: ECD_01866 - trehalose-6-phosphate phosphatase, biosynthetic, at 1,926,729 to 1,927,529 _01866 ECD_01867: ECD_01867 - L-arabinose ABC transporter permease, at 1,927,696 to 1,928,682 _01867 ECD_01868: ECD_01868 - L-arabinose ABC transporter ATPase, at 1,928,697 to 1,930,211 _01868 Position (kb) 1927 1928 1929Strain fitness (log2 ratio) -2 -1 0 1 2at 1926.755 kb on - strandat 1927.102 kb on - strand, within ECD_01866at 1927.247 kb on + strand, within ECD_01866at 1927.248 kb on - strand, within ECD_01866at 1927.248 kb on - strand, within ECD_01866at 1927.395 kb on + strand, within ECD_01866at 1927.410 kb on - strand, within ECD_01866at 1927.588 kb on + strandat 1927.588 kb on + strandat 1927.588 kb on + strandat 1927.589 kb on - strandat 1927.589 kb on - strandat 1927.589 kb on - strandat 1927.589 kb on - strandat 1927.589 kb on - strandat 1927.589 kb on - strandat 1927.773 kb on - strandat 1927.773 kb on - strandat 1928.088 kb on + strand, within ECD_01867at 1928.296 kb on + strand, within ECD_01867at 1928.646 kb on + strandat 1928.647 kb on - strandat 1928.895 kb on - strand, within ECD_01868at 1928.895 kb on - strand, within ECD_01868at 1929.106 kb on - strand, within ECD_01868at 1929.128 kb on + strand, within ECD_01868at 1929.243 kb on - strand, within ECD_01868at 1929.387 kb on + strand, within ECD_01868at 1929.550 kb on + strand, within ECD_01868at 1929.619 kb on + strand, within ECD_01868at 1929.622 kb on - strand, within ECD_01868

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Per-strain Table

Position Strand Gene LocusTag Fraction Ox4
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1,926,755 - -0.2
1,927,102 - ECD_01866 0.47 +0.6
1,927,247 + ECD_01866 0.65 +1.1
1,927,248 - ECD_01866 0.65 +0.2
1,927,248 - ECD_01866 0.65 -0.2
1,927,395 + ECD_01866 0.83 +0.6
1,927,410 - ECD_01866 0.85 +0.0
1,927,588 + -0.0
1,927,588 + -1.6
1,927,588 + -1.0
1,927,589 - +2.0
1,927,589 - +1.0
1,927,589 - +0.5
1,927,589 - +1.4
1,927,589 - +1.4
1,927,589 - +0.8
1,927,773 - +1.2
1,927,773 - +0.1
1,928,088 + ECD_01867 0.40 +0.3
1,928,296 + ECD_01867 0.61 +0.3
1,928,646 + +0.8
1,928,647 - +0.3
1,928,895 - ECD_01868 0.13 -2.0
1,928,895 - ECD_01868 0.13 +0.9
1,929,106 - ECD_01868 0.27 -0.6
1,929,128 + ECD_01868 0.28 +1.4
1,929,243 - ECD_01868 0.36 -0.7
1,929,387 + ECD_01868 0.46 -0.4
1,929,550 + ECD_01868 0.56 +0.4
1,929,619 + ECD_01868 0.61 +0.4
1,929,622 - ECD_01868 0.61 +0.6

Or see this region's nucleotide sequence