Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01828 and ECD_01829 are separated by 78 nucleotides ECD_01829 and ECD_01830 overlap by 4 nucleotides ECD_01830 and ECD_01831 are separated by 340 nucleotides
ECD_01828: ECD_01828 - zinc ABC transporter periplasmic binding protein, at 1,887,375 to 1,888,307
_01828
ECD_01829: ECD_01829 - zinc ABC transporter ATPase, at 1,888,386 to 1,889,141
_01829
ECD_01830: ECD_01830 - zinc ABC transporter permease, at 1,889,138 to 1,889,923
_01830
ECD_01831: ECD_01831 - ATP-dependent DNA helicase, component of RuvABC resolvasome, at 1,890,264 to 1,891,274
_01831
Position (kb)
1889
1890 Strain fitness (log2 ratio)
-1
0
1 at 1888.325 kb on + strand at 1888.489 kb on + strand, within ECD_01829 at 1888.511 kb on + strand, within ECD_01829 at 1888.600 kb on + strand, within ECD_01829 at 1888.862 kb on - strand, within ECD_01829 at 1888.863 kb on + strand, within ECD_01829 at 1888.863 kb on + strand, within ECD_01829 at 1888.864 kb on - strand, within ECD_01829 at 1889.214 kb on + strand at 1889.265 kb on + strand, within ECD_01830 at 1889.309 kb on + strand, within ECD_01830 at 1889.455 kb on + strand, within ECD_01830 at 1889.713 kb on + strand, within ECD_01830 at 1889.890 kb on + strand at 1890.002 kb on + strand at 1890.071 kb on + strand at 1890.126 kb on - strand at 1890.169 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 1,888,325 + +0.5 1,888,489 + ECD_01829 0.14 +0.9 1,888,511 + ECD_01829 0.17 +0.0 1,888,600 + ECD_01829 0.28 +0.6 1,888,862 - ECD_01829 0.63 +0.6 1,888,863 + ECD_01829 0.63 -0.3 1,888,863 + ECD_01829 0.63 +0.4 1,888,864 - ECD_01829 0.63 +1.0 1,889,214 + -0.5 1,889,265 + ECD_01830 0.16 +1.0 1,889,309 + ECD_01830 0.22 +0.7 1,889,455 + ECD_01830 0.40 +1.6 1,889,713 + ECD_01830 0.73 +0.5 1,889,890 + +0.8 1,890,002 + +1.1 1,890,071 + -0.3 1,890,126 - +0.8 1,890,169 - +0.4
Or see this region's nucleotide sequence