Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01827 and ECD_01828 are separated by 15 nucleotides ECD_01828 and ECD_01829 are separated by 78 nucleotides ECD_01829 and ECD_01830 overlap by 4 nucleotides
ECD_01827: ECD_01827 - murein DD-endopeptidase, space-maker hydrolase, septation protein, at 1,886,037 to 1,887,359
_01827
ECD_01828: ECD_01828 - zinc ABC transporter periplasmic binding protein, at 1,887,375 to 1,888,307
_01828
ECD_01829: ECD_01829 - zinc ABC transporter ATPase, at 1,888,386 to 1,889,141
_01829
ECD_01830: ECD_01830 - zinc ABC transporter permease, at 1,889,138 to 1,889,923
_01830
Position (kb) 1887
1888
1889 Strain fitness (log2 ratio) -1
0
1 at 1886.478 kb on - strand, within ECD_01827 at 1886.573 kb on - strand, within ECD_01827 at 1886.656 kb on - strand, within ECD_01827 at 1886.862 kb on - strand, within ECD_01827 at 1886.869 kb on + strand, within ECD_01827 at 1887.018 kb on - strand, within ECD_01827 at 1887.023 kb on - strand, within ECD_01827 at 1887.068 kb on - strand, within ECD_01827 at 1887.245 kb on - strand at 1887.401 kb on - strand at 1887.412 kb on - strand at 1887.456 kb on - strand at 1887.586 kb on - strand, within ECD_01828 at 1887.701 kb on - strand, within ECD_01828 at 1887.813 kb on - strand, within ECD_01828 at 1888.325 kb on + strand at 1888.489 kb on + strand, within ECD_01829 at 1888.511 kb on + strand, within ECD_01829 at 1888.600 kb on + strand, within ECD_01829 at 1888.862 kb on - strand, within ECD_01829 at 1888.863 kb on + strand, within ECD_01829 at 1888.863 kb on + strand, within ECD_01829 at 1888.864 kb on - strand, within ECD_01829 at 1889.214 kb on + strand at 1889.265 kb on + strand, within ECD_01830
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 1,886,478 - ECD_01827 0.33 -1.4 1,886,573 - ECD_01827 0.41 +0.0 1,886,656 - ECD_01827 0.47 -0.5 1,886,862 - ECD_01827 0.62 -1.1 1,886,869 + ECD_01827 0.63 +0.6 1,887,018 - ECD_01827 0.74 -1.4 1,887,023 - ECD_01827 0.75 -0.4 1,887,068 - ECD_01827 0.78 -1.1 1,887,245 - +0.1 1,887,401 - -0.4 1,887,412 - +0.5 1,887,456 - -0.2 1,887,586 - ECD_01828 0.23 +1.0 1,887,701 - ECD_01828 0.35 +1.1 1,887,813 - ECD_01828 0.47 -0.0 1,888,325 + +0.5 1,888,489 + ECD_01829 0.14 +0.9 1,888,511 + ECD_01829 0.17 +0.0 1,888,600 + ECD_01829 0.28 +0.6 1,888,862 - ECD_01829 0.63 +0.6 1,888,863 + ECD_01829 0.63 -0.3 1,888,863 + ECD_01829 0.63 +0.4 1,888,864 - ECD_01829 0.63 +1.0 1,889,214 + -0.5 1,889,265 + ECD_01830 0.16 +1.0
Or see this region's nucleotide sequence