Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01786 and ECD_01787 are separated by 462 nucleotides ECD_01787 and ECD_01788 are separated by 62 nucleotides ECD_01788 and ECD_01789 are separated by 12 nucleotides
ECD_01786: ECD_01786 - putative membrane protein/conserved protein, at 1,845,756 to 1,847,312
_01786
ECD_01787: ECD_01787 - fused mannose-specific PTS enzymes: IIA component/IIB component, at 1,847,775 to 1,848,746
_01787
ECD_01788: ECD_01788 - mannose-specific enzyme IIC component of PTS, at 1,848,809 to 1,849,609
_01788
ECD_01789: ECD_01789 - mannose-specific enzyme IID component of PTS, at 1,849,622 to 1,850,473
_01789
Position (kb)
1847
1848
1849 Strain fitness (log2 ratio)
-2
-1
0
1 at 1846.812 kb on - strand, within ECD_01786 at 1847.684 kb on + strand at 1847.760 kb on + strand at 1847.794 kb on + strand at 1847.951 kb on + strand, within ECD_01787 at 1847.975 kb on + strand, within ECD_01787 at 1848.433 kb on + strand, within ECD_01787 at 1848.433 kb on + strand, within ECD_01787 at 1848.749 kb on + strand at 1848.749 kb on + strand at 1848.844 kb on + strand at 1849.150 kb on + strand, within ECD_01788 at 1849.541 kb on + strand at 1849.630 kb on + strand at 1849.729 kb on + strand, within ECD_01789 at 1849.729 kb on + strand, within ECD_01789
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 1,846,812 - ECD_01786 0.68 +0.1 1,847,684 + -2.6 1,847,760 + +0.3 1,847,794 + -0.9 1,847,951 + ECD_01787 0.18 -0.3 1,847,975 + ECD_01787 0.21 -0.6 1,848,433 + ECD_01787 0.68 -1.6 1,848,433 + ECD_01787 0.68 -0.1 1,848,749 + +1.3 1,848,749 + +0.0 1,848,844 + +1.0 1,849,150 + ECD_01788 0.43 +1.5 1,849,541 + +0.9 1,849,630 + +0.3 1,849,729 + ECD_01789 0.13 -0.7 1,849,729 + ECD_01789 0.13 -0.0
Or see this region's nucleotide sequence