Strain Fitness in Escherichia coli BL21 around ECD_01719

Experiment: Ox4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01718 and ECD_01719 are separated by 166 nucleotidesECD_01719 and ECD_01721 are separated by 659 nucleotides ECD_01718: ECD_01718 - exonuclease III, at 1,776,841 to 1,777,647 _01718 ECD_01719: ECD_01719 - TVP38/TMEM64 family inner membrane protein, at 1,777,814 to 1,778,524 _01719 ECD_01721: ECD_01721 - TVP38/TMEM64 family inner membrane protein, at 1,779,184 to 1,779,891 _01721 Position (kb) 1777 1778 1779Strain fitness (log2 ratio) -1 0 1at 1777.921 kb on - strand, within ECD_01719at 1778.426 kb on - strand, within ECD_01719at 1778.500 kb on + strandat 1778.522 kb on + strandat 1778.656 kb on + strandat 1778.716 kb on + strandat 1779.059 kb on + strandat 1779.065 kb on + strandat 1779.291 kb on + strand, within ECD_01721

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Per-strain Table

Position Strand Gene LocusTag Fraction Ox4
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1,777,921 - ECD_01719 0.15 -1.4
1,778,426 - ECD_01719 0.86 -0.7
1,778,500 + -0.5
1,778,522 + +1.4
1,778,656 + -1.3
1,778,716 + -0.7
1,779,059 + +1.0
1,779,065 + +0.7
1,779,291 + ECD_01721 0.15 -1.3

Or see this region's nucleotide sequence