Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01647 and ECD_01648 are separated by 148 nucleotides ECD_01648 and ECD_01649 are separated by 12 nucleotides ECD_01649 and ECD_01650 overlap by 4 nucleotides
ECD_01647: ECD_01647 - murein L,D-transpeptidase, at 1,702,990 to 1,703,994
_01647
ECD_01648: ECD_01648 - sulfur acceptor protein, at 1,704,143 to 1,704,559
_01648
ECD_01649: ECD_01649 - cysteine desulfurase, stimulated by SufE; selenocysteine lyase, PLP-dependent, at 1,704,572 to 1,705,792
_01649
ECD_01650: ECD_01650 - component of SufBCD Fe-S cluster assembly scaffold, at 1,705,789 to 1,707,060
_01650
Position (kb)
1704
1705
1706 Strain fitness (log2 ratio)
-2
-1
0
1 at 1703.626 kb on - strand, within ECD_01647 at 1704.144 kb on + strand at 1704.640 kb on - strand at 1704.679 kb on - strand at 1704.682 kb on - strand at 1704.915 kb on + strand, within ECD_01649 at 1705.084 kb on - strand, within ECD_01649 at 1705.418 kb on - strand, within ECD_01649 at 1705.622 kb on - strand, within ECD_01649 at 1705.963 kb on - strand, within ECD_01650 at 1706.122 kb on - strand, within ECD_01650 at 1706.176 kb on - strand, within ECD_01650 at 1706.187 kb on + strand, within ECD_01650 at 1706.335 kb on - strand, within ECD_01650 at 1706.593 kb on - strand, within ECD_01650
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 1,703,626 - ECD_01647 0.63 -0.2 1,704,144 + +0.5 1,704,640 - +0.3 1,704,679 - +0.3 1,704,682 - -0.1 1,704,915 + ECD_01649 0.28 -1.6 1,705,084 - ECD_01649 0.42 -0.9 1,705,418 - ECD_01649 0.69 -0.9 1,705,622 - ECD_01649 0.86 +1.1 1,705,963 - ECD_01650 0.14 +0.3 1,706,122 - ECD_01650 0.26 -1.7 1,706,176 - ECD_01650 0.30 +0.3 1,706,187 + ECD_01650 0.31 -0.3 1,706,335 - ECD_01650 0.43 +0.4 1,706,593 - ECD_01650 0.63 -1.9
Or see this region's nucleotide sequence