Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01620 and ECD_01621 are separated by 80 nucleotides ECD_01621 and ECD_01622 are separated by 102 nucleotides ECD_01622 and ECD_01623 are separated by 92 nucleotides
ECD_01620: ECD_01620 - chromate reductase, quinone reductase, FMN-linked; N-Ethylmaleimide reductase; old yellow enzyme, at 1,671,855 to 1,672,952
_01620
ECD_01621: ECD_01621 - glyoxalase I, Ni-dependent, at 1,673,033 to 1,673,440
_01621
ECD_01622: ECD_01622 - RNase T; exoribonuclease T; structured DNA 3, at 1,673,543 to 1,674,190
_01622
ECD_01623: ECD_01623 - putative ATP-dependent helicase, at 1,674,283 to 1,678,899
_01623
Position (kb) 1673
1674 Strain fitness (log2 ratio) -1
0
1 at 1672.145 kb on + strand, within ECD_01620 at 1672.621 kb on - strand, within ECD_01620 at 1672.764 kb on + strand, within ECD_01620 at 1672.765 kb on - strand, within ECD_01620 at 1672.883 kb on + strand at 1672.986 kb on + strand at 1673.268 kb on + strand, within ECD_01621 at 1673.314 kb on + strand, within ECD_01621 at 1673.438 kb on + strand at 1673.438 kb on + strand at 1674.231 kb on - strand at 1674.232 kb on + strand at 1674.262 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 1,672,145 + ECD_01620 0.26 +1.2 1,672,621 - ECD_01620 0.70 -0.7 1,672,764 + ECD_01620 0.83 -0.5 1,672,765 - ECD_01620 0.83 +0.4 1,672,883 + -0.3 1,672,986 + +1.2 1,673,268 + ECD_01621 0.58 -0.5 1,673,314 + ECD_01621 0.69 -0.7 1,673,438 + +0.3 1,673,438 + -0.5 1,674,231 - +1.1 1,674,232 + +1.0 1,674,262 + +0.3
Or see this region's nucleotide sequence