Strain Fitness in Escherichia coli BL21 around ECD_01164

Experiment: Ox4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01163 and ECD_01164 are separated by 329 nucleotidesECD_01164 and ECD_01165 are separated by 9 nucleotides ECD_01163: ECD_01163 - SpoVR family stationary phase protein, at 1,223,857 to 1,225,389 _01163 ECD_01164: ECD_01164 - D-amino acid dehydrogenase, at 1,225,719 to 1,227,017 _01164 ECD_01165: ECD_01165 - alanine racemase, catabolic, PLP-binding, at 1,227,027 to 1,228,097 _01165 Position (kb) 1225 1226 1227 1228Strain fitness (log2 ratio) -3 -2 -1 0 1at 1224.764 kb on - strand, within ECD_01163at 1225.135 kb on - strand, within ECD_01163at 1225.696 kb on + strandat 1225.996 kb on + strand, within ECD_01164at 1226.000 kb on + strand, within ECD_01164at 1226.000 kb on + strand, within ECD_01164at 1226.000 kb on + strand, within ECD_01164at 1226.059 kb on - strand, within ECD_01164at 1226.819 kb on + strand, within ECD_01164at 1226.937 kb on + strandat 1226.998 kb on + strandat 1227.712 kb on + strand, within ECD_01165

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Per-strain Table

Position Strand Gene LocusTag Fraction Ox4
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1,224,764 - ECD_01163 0.59 -0.6
1,225,135 - ECD_01163 0.83 -3.3
1,225,696 + -0.5
1,225,996 + ECD_01164 0.21 -0.5
1,226,000 + ECD_01164 0.22 +1.4
1,226,000 + ECD_01164 0.22 -0.6
1,226,000 + ECD_01164 0.22 -2.0
1,226,059 - ECD_01164 0.26 -0.9
1,226,819 + ECD_01164 0.85 -0.5
1,226,937 + -1.7
1,226,998 + -0.2
1,227,712 + ECD_01165 0.64 -0.7

Or see this region's nucleotide sequence