Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01127 and ECD_01128 overlap by 1 nucleotides ECD_01128 and ECD_01129 are separated by 167 nucleotides ECD_01129 and ECD_01130 are separated by 3 nucleotides ECD_01130 and ECD_01131 are separated by 35 nucleotides
ECD_01127: ECD_01127 - sensory histidine kinase in two-component regulatory system with PhoP, at 1,191,684 to 1,193,144
_01127
ECD_01128: ECD_01128 - response regulator in two-component regulatory system with PhoQ, at 1,193,144 to 1,193,815
_01128
ECD_01129: ECD_01129 - adenylosuccinate lyase, at 1,193,983 to 1,195,353
_01129
ECD_01130: ECD_01130 - putative lysogenization regulator, at 1,195,357 to 1,195,998
_01130
ECD_01131: ECD_01131 - tRNA(Gln,Lys,Glu) U34 2-thiouridylase, at 1,196,034 to 1,197,140
_01131
Position (kb)
1193
1194
1195
1196 Strain fitness (log2 ratio)
-1
0
1
2 at 1193.394 kb on - strand, within ECD_01128 at 1195.529 kb on - strand, within ECD_01130 at 1195.587 kb on - strand, within ECD_01130 at 1195.587 kb on - strand, within ECD_01130 at 1195.870 kb on - strand, within ECD_01130 at 1195.870 kb on - strand, within ECD_01130 at 1195.870 kb on - strand, within ECD_01130 at 1195.870 kb on - strand, within ECD_01130 at 1195.957 kb on - strand at 1196.019 kb on - strand at 1196.029 kb on - strand at 1196.029 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 1,193,394 - ECD_01128 0.37 -0.9 1,195,529 - ECD_01130 0.27 +0.5 1,195,587 - ECD_01130 0.36 +0.3 1,195,587 - ECD_01130 0.36 +1.5 1,195,870 - ECD_01130 0.80 +1.0 1,195,870 - ECD_01130 0.80 +1.6 1,195,870 - ECD_01130 0.80 +1.8 1,195,870 - ECD_01130 0.80 +1.8 1,195,957 - +0.4 1,196,019 - -0.1 1,196,029 - +1.0 1,196,029 - +0.0
Or see this region's nucleotide sequence