Strain Fitness in Escherichia coli BL21 around ECD_01129

Experiment: Ox4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01127 and ECD_01128 overlap by 1 nucleotidesECD_01128 and ECD_01129 are separated by 167 nucleotidesECD_01129 and ECD_01130 are separated by 3 nucleotidesECD_01130 and ECD_01131 are separated by 35 nucleotides ECD_01127: ECD_01127 - sensory histidine kinase in two-component regulatory system with PhoP, at 1,191,684 to 1,193,144 _01127 ECD_01128: ECD_01128 - response regulator in two-component regulatory system with PhoQ, at 1,193,144 to 1,193,815 _01128 ECD_01129: ECD_01129 - adenylosuccinate lyase, at 1,193,983 to 1,195,353 _01129 ECD_01130: ECD_01130 - putative lysogenization regulator, at 1,195,357 to 1,195,998 _01130 ECD_01131: ECD_01131 - tRNA(Gln,Lys,Glu) U34 2-thiouridylase, at 1,196,034 to 1,197,140 _01131 Position (kb) 1193 1194 1195 1196Strain fitness (log2 ratio) -1 0 1 2at 1193.394 kb on - strand, within ECD_01128at 1195.529 kb on - strand, within ECD_01130at 1195.587 kb on - strand, within ECD_01130at 1195.587 kb on - strand, within ECD_01130at 1195.870 kb on - strand, within ECD_01130at 1195.870 kb on - strand, within ECD_01130at 1195.870 kb on - strand, within ECD_01130at 1195.870 kb on - strand, within ECD_01130at 1195.957 kb on - strandat 1196.019 kb on - strandat 1196.029 kb on - strandat 1196.029 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ox4
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1,193,394 - ECD_01128 0.37 -0.9
1,195,529 - ECD_01130 0.27 +0.5
1,195,587 - ECD_01130 0.36 +0.3
1,195,587 - ECD_01130 0.36 +1.5
1,195,870 - ECD_01130 0.80 +1.0
1,195,870 - ECD_01130 0.80 +1.6
1,195,870 - ECD_01130 0.80 +1.8
1,195,870 - ECD_01130 0.80 +1.8
1,195,957 - +0.4
1,196,019 - -0.1
1,196,029 - +1.0
1,196,029 - +0.0

Or see this region's nucleotide sequence