Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01051 and ECD_01052 are separated by 41 nucleotides ECD_01052 and ECD_01053 are separated by 3 nucleotides ECD_01053 and ECD_01054 are separated by 260 nucleotides ECD_01054 and ECD_01055 are separated by 20 nucleotides
ECD_01051: ECD_01051 - putative rhodanese-related sulfurtransferase, at 1,119,374 to 1,120,426
_01051
ECD_01052: ECD_01052 - periplasmic high pH-inducible lipid-binding protein, at 1,120,468 to 1,121,043
_01052
ECD_01053: ECD_01053 - putative cytochrome b561, at 1,121,047 to 1,121,613
_01053
ECD_01054: ECD_01054 - uncharacterized protein, at 1,121,874 to 1,122,014
_01054
ECD_01055: ECD_01055 - N-methyltryptophan oxidase, FAD-binding, at 1,122,035 to 1,123,153
_01055
Position (kb) 1121
1122 Strain fitness (log2 ratio) -1
0
1
2 at 1120.105 kb on + strand, within ECD_01051 at 1120.147 kb on + strand, within ECD_01051 at 1120.372 kb on + strand at 1120.372 kb on + strand at 1120.424 kb on + strand at 1121.156 kb on - strand, within ECD_01053 at 1121.322 kb on - strand, within ECD_01053 at 1121.399 kb on - strand, within ECD_01053 at 1121.578 kb on - strand at 1122.365 kb on - strand, within ECD_01055 at 1122.609 kb on - strand, within ECD_01055
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 1,120,105 + ECD_01051 0.69 -0.6 1,120,147 + ECD_01051 0.73 -0.8 1,120,372 + -0.8 1,120,372 + +1.3 1,120,424 + +1.9 1,121,156 - ECD_01053 0.19 -0.9 1,121,322 - ECD_01053 0.49 -0.7 1,121,399 - ECD_01053 0.62 -0.6 1,121,578 - -0.4 1,122,365 - ECD_01055 0.29 -0.5 1,122,609 - ECD_01055 0.51 -0.6
Or see this region's nucleotide sequence