Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00954 and ECD_00955 are separated by 4 nucleotides ECD_00955 and ECD_00956 overlap by 4 nucleotides ECD_00956 and ECD_00957 are separated by 255 nucleotides
ECD_00954: ECD_00954 - paraquat-inducible, SoxRS-regulated inner membrane protein, at 1,017,090 to 1,018,343
_00954
ECD_00955: ECD_00955 - paraquat-inducible, SoxRS-regulated MCE domain protein, at 1,018,348 to 1,019,988
_00955
ECD_00956: ECD_00956 - DUF330 family putative lipoprotein, at 1,019,985 to 1,020,548
_00956
ECD_00957: ECD_00957 - ribosome modulation factor, at 1,020,804 to 1,020,971
_00957
Position (kb)
1018
1019
1020 Strain fitness (log2 ratio)
-1
0
1
2 at 1017.582 kb on + strand, within ECD_00954 at 1017.770 kb on + strand, within ECD_00954 at 1018.026 kb on - strand, within ECD_00954 at 1018.028 kb on + strand, within ECD_00954 at 1018.141 kb on + strand, within ECD_00954 at 1018.217 kb on + strand, within ECD_00954 at 1018.217 kb on + strand, within ECD_00954 at 1018.359 kb on + strand at 1018.726 kb on + strand, within ECD_00955 at 1018.969 kb on + strand, within ECD_00955 at 1019.840 kb on - strand at 1020.174 kb on + strand, within ECD_00956 at 1020.195 kb on + strand, within ECD_00956 at 1020.734 kb on + strand at 1020.752 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 1,017,582 + ECD_00954 0.39 -0.9 1,017,770 + ECD_00954 0.54 -0.6 1,018,026 - ECD_00954 0.75 +0.7 1,018,028 + ECD_00954 0.75 +0.9 1,018,141 + ECD_00954 0.84 +0.8 1,018,217 + ECD_00954 0.90 +0.8 1,018,217 + ECD_00954 0.90 +1.6 1,018,359 + -0.1 1,018,726 + ECD_00955 0.23 -0.1 1,018,969 + ECD_00955 0.38 +1.3 1,019,840 - +0.8 1,020,174 + ECD_00956 0.34 +2.5 1,020,195 + ECD_00956 0.37 +0.9 1,020,734 + -0.0 1,020,752 + +0.8
Or see this region's nucleotide sequence