Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00625 and ECD_00626 are separated by 24 nucleotides ECD_00626 and ECD_00627 are separated by 89 nucleotides ECD_00627 and ECD_00628 overlap by 4 nucleotides
ECD_00625: ECD_00625 - apolipoprotein N-acyltransferase, at 649,217 to 650,755
_00625
ECD_00626: ECD_00626 - putative ion transport, at 650,780 to 651,658
_00626
ECD_00627: ECD_00627 - ssRNA-specific endoribonuclease; 16S rRNA 3, at 651,748 to 652,215
_00627
ECD_00628: ECD_00628 - heat shock protein, putative NTPase; PhoH-like protein, at 652,212 to 653,291
_00628
Position (kb) 650
651
652 Strain fitness (log2 ratio) -2
-1
0
1 at 650.837 kb on - strand at 650.840 kb on - strand at 651.029 kb on - strand, within ECD_00626 at 651.073 kb on - strand, within ECD_00626 at 651.243 kb on - strand, within ECD_00626 at 651.500 kb on - strand, within ECD_00626 at 651.624 kb on - strand at 651.635 kb on - strand at 651.635 kb on - strand at 651.635 kb on - strand at 651.750 kb on - strand at 651.750 kb on - strand at 652.402 kb on - strand, within ECD_00628 at 652.402 kb on - strand, within ECD_00628 at 652.413 kb on - strand, within ECD_00628 at 652.416 kb on - strand, within ECD_00628 at 652.569 kb on - strand, within ECD_00628 at 652.571 kb on - strand, within ECD_00628 at 652.655 kb on - strand, within ECD_00628
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 650,837 - -1.5 650,840 - -2.5 651,029 - ECD_00626 0.28 -1.0 651,073 - ECD_00626 0.33 -2.3 651,243 - ECD_00626 0.53 -2.0 651,500 - ECD_00626 0.82 -1.5 651,624 - -1.7 651,635 - -1.4 651,635 - -1.4 651,635 - -1.1 651,750 - +0.6 651,750 - +0.7 652,402 - ECD_00628 0.18 +1.0 652,402 - ECD_00628 0.18 +0.4 652,413 - ECD_00628 0.19 -0.3 652,416 - ECD_00628 0.19 +0.5 652,569 - ECD_00628 0.33 +0.8 652,571 - ECD_00628 0.33 +0.3 652,655 - ECD_00628 0.41 +0.4
Or see this region's nucleotide sequence