Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00506 and ECD_00507 overlap by 1 nucleotides ECD_00507 and ECD_00508 overlap by 4 nucleotides ECD_00508 and ECD_00509 are separated by 31 nucleotides ECD_00509 and ECD_00510 are separated by 360 nucleotides ECD_00510 and ECD_00511 are separated by 388 nucleotides
ECD_00506: ECD_00506 - DLP12 prophage; putative phage lysis protein, at 545,572 to 545,787
_00506
ECD_00507: ECD_00507 - DLP12 prophage; putative lysozyme, at 545,787 to 546,284
_00507
ECD_00508: ECD_00508 - DLP12 prophage; putative murein endopeptidase, at 546,281 to 546,742
_00508
ECD_00509: ECD_00509 - DLP12 prophage; putative lipoprotein, at 546,774 to 547,067
_00509
ECD_00510: ECD_00510 - hypothetical protein, at 547,428 to 547,622
_00510
ECD_00511: ECD_00511 - DLP12 prophage; DNA packaging protein, at 548,011 to 548,586
_00511
Position (kb) 546
547
548 Strain fitness (log2 ratio) -2
-1
0
1 at 545.785 kb on + strand at 545.843 kb on + strand, within ECD_00507 at 545.845 kb on + strand, within ECD_00507 at 545.845 kb on + strand, within ECD_00507 at 545.902 kb on - strand, within ECD_00507 at 545.905 kb on + strand, within ECD_00507 at 545.906 kb on - strand, within ECD_00507 at 545.918 kb on + strand, within ECD_00507 at 545.939 kb on - strand, within ECD_00507 at 546.055 kb on + strand, within ECD_00507 at 546.055 kb on + strand, within ECD_00507 at 546.065 kb on + strand, within ECD_00507 at 546.204 kb on + strand, within ECD_00507 at 546.204 kb on + strand, within ECD_00507 at 546.204 kb on + strand, within ECD_00507 at 546.205 kb on - strand, within ECD_00507 at 546.205 kb on - strand, within ECD_00507 at 546.205 kb on - strand, within ECD_00507 at 546.302 kb on - strand at 546.496 kb on - strand, within ECD_00508 at 547.029 kb on - strand, within ECD_00509 at 547.071 kb on - strand at 547.153 kb on + strand at 547.255 kb on + strand at 547.267 kb on - strand at 547.717 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 545,785 + +0.2 545,843 + ECD_00507 0.11 +0.6 545,845 + ECD_00507 0.12 +0.2 545,845 + ECD_00507 0.12 -0.4 545,902 - ECD_00507 0.23 -0.3 545,905 + ECD_00507 0.24 +0.7 545,906 - ECD_00507 0.24 +0.5 545,918 + ECD_00507 0.26 +1.3 545,939 - ECD_00507 0.31 -0.3 546,055 + ECD_00507 0.54 +1.4 546,055 + ECD_00507 0.54 -1.7 546,065 + ECD_00507 0.56 +0.6 546,204 + ECD_00507 0.84 -0.6 546,204 + ECD_00507 0.84 -1.9 546,204 + ECD_00507 0.84 +0.6 546,205 - ECD_00507 0.84 +0.1 546,205 - ECD_00507 0.84 +0.8 546,205 - ECD_00507 0.84 -0.6 546,302 - -0.9 546,496 - ECD_00508 0.47 -0.0 547,029 - ECD_00509 0.87 -1.0 547,071 - +0.0 547,153 + -0.2 547,255 + +0.5 547,267 - +0.2 547,717 + +0.7
Or see this region's nucleotide sequence