Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00440 and ECD_00441 are separated by 145 nucleotides ECD_00441 and ECD_00442 overlap by 14 nucleotides ECD_00442 and ECD_00443 are separated by 62 nucleotides
ECD_00440: ECD_00440 - PHB domain membrane-anchored putative protease, at 484,003 to 484,920
_00440
ECD_00441: ECD_00441 - iron export ABC transporter ATPase; peroxide resistance protein, at 485,066 to 485,743
_00441
ECD_00442: ECD_00442 - iron export ABC transporter permease; peroxide resistance protein, at 485,730 to 486,509
_00442
ECD_00443: ECD_00443 - DnaK co-chaperone, thioredoxin-like protein, at 486,572 to 487,426
_00443
Position (kb) 485
486 Strain fitness (log2 ratio) -2
-1
0
1 at 484.164 kb on - strand, within ECD_00440 at 484.180 kb on - strand, within ECD_00440 at 484.368 kb on - strand, within ECD_00440 at 484.416 kb on + strand, within ECD_00440 at 484.417 kb on - strand, within ECD_00440 at 484.417 kb on - strand, within ECD_00440 at 484.453 kb on - strand, within ECD_00440 at 484.578 kb on + strand, within ECD_00440 at 484.579 kb on - strand, within ECD_00440 at 484.626 kb on - strand, within ECD_00440 at 484.741 kb on - strand, within ECD_00440 at 485.286 kb on + strand, within ECD_00441 at 485.287 kb on - strand, within ECD_00441 at 485.355 kb on + strand, within ECD_00441 at 485.742 kb on - strand at 485.797 kb on + strand at 486.374 kb on + strand, within ECD_00442 at 486.441 kb on + strand at 486.577 kb on - strand at 486.577 kb on - strand at 486.589 kb on - strand at 486.589 kb on - strand at 486.603 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 484,164 - ECD_00440 0.18 +0.2 484,180 - ECD_00440 0.19 -0.9 484,368 - ECD_00440 0.40 +1.2 484,416 + ECD_00440 0.45 +0.4 484,417 - ECD_00440 0.45 -0.3 484,417 - ECD_00440 0.45 -0.2 484,453 - ECD_00440 0.49 +0.7 484,578 + ECD_00440 0.63 -1.5 484,579 - ECD_00440 0.63 -1.1 484,626 - ECD_00440 0.68 -2.0 484,741 - ECD_00440 0.80 +0.3 485,286 + ECD_00441 0.32 -2.7 485,287 - ECD_00441 0.33 -0.0 485,355 + ECD_00441 0.43 -0.8 485,742 - +0.1 485,797 + +0.5 486,374 + ECD_00442 0.83 -1.6 486,441 + +0.5 486,577 - +0.8 486,577 - +0.1 486,589 - +0.4 486,589 - +1.2 486,603 + -1.1
Or see this region's nucleotide sequence