Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00359 and ECD_00360 are separated by 298 nucleotides ECD_00360 and ECD_00361 are separated by 150 nucleotides ECD_00361 and ECD_00362 are separated by 3 nucleotides
ECD_00359: ECD_00359 - nucleoside channel, receptor of phage T6 and colicin K, at 396,530 to 397,414
_00359
ECD_00360: ECD_00360 - putative lipoprotein, at 397,713 to 398,252
_00360
ECD_00361: ECD_00361 - Nrd regulon repressor, at 398,403 to 398,852
_00361
ECD_00362: ECD_00362 - fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase, at 398,856 to 399,959
_00362
Position (kb) 398
399 Strain fitness (log2 ratio) -1
0
1
2 at 397.418 kb on + strand at 397.419 kb on - strand at 397.419 kb on - strand at 397.419 kb on - strand at 397.419 kb on - strand at 397.631 kb on + strand at 397.832 kb on + strand, within ECD_00360 at 397.873 kb on - strand, within ECD_00360 at 397.894 kb on + strand, within ECD_00360 at 397.895 kb on - strand, within ECD_00360 at 397.947 kb on - strand, within ECD_00360 at 397.950 kb on + strand, within ECD_00360 at 397.950 kb on + strand, within ECD_00360 at 397.951 kb on - strand, within ECD_00360 at 397.951 kb on - strand, within ECD_00360 at 397.951 kb on - strand, within ECD_00360 at 397.974 kb on - strand, within ECD_00360 at 397.982 kb on + strand, within ECD_00360 at 397.982 kb on + strand, within ECD_00360 at 397.985 kb on + strand, within ECD_00360 at 397.986 kb on - strand, within ECD_00360 at 398.001 kb on - strand, within ECD_00360 at 398.001 kb on - strand, within ECD_00360 at 398.004 kb on + strand, within ECD_00360 at 398.005 kb on - strand, within ECD_00360 at 398.005 kb on - strand, within ECD_00360 at 398.060 kb on - strand, within ECD_00360 at 398.246 kb on + strand at 398.247 kb on - strand at 398.252 kb on + strand at 398.252 kb on + strand at 398.282 kb on + strand at 398.283 kb on - strand at 398.288 kb on + strand at 398.364 kb on + strand at 398.440 kb on + strand at 398.504 kb on + strand, within ECD_00361 at 398.504 kb on + strand, within ECD_00361 at 398.675 kb on + strand, within ECD_00361 at 398.675 kb on + strand, within ECD_00361 at 398.762 kb on + strand, within ECD_00361
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 397,418 + -1.7 397,419 - -0.3 397,419 - +1.6 397,419 - -0.4 397,419 - -0.5 397,631 + +0.9 397,832 + ECD_00360 0.22 +0.1 397,873 - ECD_00360 0.30 +0.1 397,894 + ECD_00360 0.34 -0.1 397,895 - ECD_00360 0.34 -0.1 397,947 - ECD_00360 0.43 +0.0 397,950 + ECD_00360 0.44 +0.6 397,950 + ECD_00360 0.44 -0.1 397,951 - ECD_00360 0.44 -0.1 397,951 - ECD_00360 0.44 +0.4 397,951 - ECD_00360 0.44 +0.8 397,974 - ECD_00360 0.48 -0.7 397,982 + ECD_00360 0.50 +0.3 397,982 + ECD_00360 0.50 -1.2 397,985 + ECD_00360 0.50 +0.2 397,986 - ECD_00360 0.51 -0.3 398,001 - ECD_00360 0.53 -0.2 398,001 - ECD_00360 0.53 +0.8 398,004 + ECD_00360 0.54 +1.2 398,005 - ECD_00360 0.54 -0.6 398,005 - ECD_00360 0.54 +0.5 398,060 - ECD_00360 0.64 +0.2 398,246 + -0.1 398,247 - -1.0 398,252 + -0.7 398,252 + +0.7 398,282 + +1.1 398,283 - +0.3 398,288 + +0.2 398,364 + -0.2 398,440 + +1.2 398,504 + ECD_00361 0.22 +1.2 398,504 + ECD_00361 0.22 +0.7 398,675 + ECD_00361 0.60 +0.9 398,675 + ECD_00361 0.60 +1.0 398,762 + ECD_00361 0.80 +2.4
Or see this region's nucleotide sequence