Strain Fitness in Escherichia coli BL21 around ECD_00338

Experiment: Ox4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00337 and ECD_00338 are separated by 71 nucleotidesECD_00338 and ECD_00339 are separated by 207 nucleotidesECD_00339 and ECD_00340 are separated by 167 nucleotides ECD_00337: ECD_00337 - AroM family protein, at 372,053 to 372,730 _00337 ECD_00338: ECD_00338 - UPF0345 family protein, at 372,802 to 373,086 _00338 ECD_00339: ECD_00339 - hypothetical protein, at 373,294 to 373,575 _00339 ECD_00340: ECD_00340 - IS1 protein InsB, at 373,743 to 374,246 _00340 Position (kb) 372 373 374Strain fitness (log2 ratio) -3 -2 -1 0 1at 371.878 kb on + strandat 371.974 kb on + strandat 371.974 kb on + strandat 371.983 kb on + strandat 371.983 kb on + strandat 371.984 kb on - strandat 371.984 kb on - strandat 372.090 kb on + strandat 372.090 kb on + strandat 372.090 kb on + strandat 372.095 kb on - strandat 372.095 kb on - strandat 372.142 kb on + strand, within ECD_00337at 372.142 kb on + strand, within ECD_00337at 372.172 kb on - strand, within ECD_00337at 372.237 kb on + strand, within ECD_00337at 372.237 kb on + strand, within ECD_00337at 372.237 kb on + strand, within ECD_00337at 372.238 kb on - strand, within ECD_00337at 372.238 kb on - strand, within ECD_00337at 372.334 kb on + strand, within ECD_00337at 372.335 kb on - strand, within ECD_00337at 372.337 kb on - strand, within ECD_00337at 372.339 kb on + strand, within ECD_00337at 372.365 kb on - strand, within ECD_00337at 372.427 kb on + strand, within ECD_00337at 372.693 kb on + strandat 372.761 kb on + strandat 372.771 kb on + strandat 372.888 kb on + strand, within ECD_00338at 372.994 kb on + strand, within ECD_00338at 372.994 kb on + strand, within ECD_00338at 372.995 kb on - strand, within ECD_00338at 373.212 kb on + strandat 373.213 kb on - strandat 373.348 kb on - strand, within ECD_00339at 373.405 kb on - strand, within ECD_00339at 373.463 kb on + strand, within ECD_00339at 373.463 kb on + strand, within ECD_00339at 373.469 kb on + strand, within ECD_00339at 373.499 kb on + strand, within ECD_00339at 373.616 kb on + strandat 373.616 kb on + strandat 373.616 kb on + strandat 373.617 kb on - strandat 373.617 kb on - strandat 373.654 kb on - strandat 373.659 kb on + strandat 373.660 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ox4
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371,878 + +0.3
371,974 + -0.4
371,974 + -1.1
371,983 + -1.3
371,983 + +0.1
371,984 - -1.4
371,984 - +0.1
372,090 + -0.1
372,090 + +0.4
372,090 + +0.4
372,095 - +0.7
372,095 - -0.3
372,142 + ECD_00337 0.13 -1.1
372,142 + ECD_00337 0.13 +0.6
372,172 - ECD_00337 0.18 -0.1
372,237 + ECD_00337 0.27 -0.6
372,237 + ECD_00337 0.27 +0.3
372,237 + ECD_00337 0.27 +0.1
372,238 - ECD_00337 0.27 +1.1
372,238 - ECD_00337 0.27 +0.2
372,334 + ECD_00337 0.41 +0.8
372,335 - ECD_00337 0.42 -3.1
372,337 - ECD_00337 0.42 +0.3
372,339 + ECD_00337 0.42 +0.2
372,365 - ECD_00337 0.46 -0.0
372,427 + ECD_00337 0.55 +0.4
372,693 + -0.9
372,761 + +0.6
372,771 + +0.3
372,888 + ECD_00338 0.30 -1.1
372,994 + ECD_00338 0.67 -0.8
372,994 + ECD_00338 0.67 -1.5
372,995 - ECD_00338 0.68 -0.9
373,212 + -0.3
373,213 - -1.5
373,348 - ECD_00339 0.19 +1.1
373,405 - ECD_00339 0.39 +1.1
373,463 + ECD_00339 0.60 -1.8
373,463 + ECD_00339 0.60 +0.5
373,469 + ECD_00339 0.62 +1.3
373,499 + ECD_00339 0.73 -0.2
373,616 + -0.2
373,616 + -0.1
373,616 + +0.6
373,617 - +0.7
373,617 - -0.6
373,654 - -0.5
373,659 + -1.0
373,660 - -0.6

Or see this region's nucleotide sequence