Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00184 and ECD_00185 are separated by 56 nucleotides ECD_00185 and ECD_00186 are separated by 64 nucleotides
ECD_00184: ECD_00184 - lysine decarboxylase 2, constitutive, at 212,522 to 214,663
_00184
ECD_00185: ECD_00185 - putative lyase, at 214,720 to 215,109
_00185
ECD_00186: ECD_00186 - tRNA(Ile)-lysidine synthetase, at 215,174 to 216,472
_00186
Position (kb) 214
215
216 Strain fitness (log2 ratio) -2
-1
0
1 at 213.877 kb on + strand, within ECD_00184 at 213.970 kb on + strand, within ECD_00184 at 213.970 kb on + strand, within ECD_00184 at 213.970 kb on + strand, within ECD_00184 at 213.971 kb on - strand, within ECD_00184 at 213.971 kb on - strand, within ECD_00184 at 214.225 kb on + strand, within ECD_00184 at 214.241 kb on + strand, within ECD_00184 at 214.270 kb on + strand, within ECD_00184 at 214.277 kb on - strand, within ECD_00184 at 214.304 kb on - strand, within ECD_00184 at 214.304 kb on - strand, within ECD_00184 at 214.304 kb on - strand, within ECD_00184 at 214.405 kb on + strand, within ECD_00184 at 214.416 kb on + strand, within ECD_00184 at 214.462 kb on + strand at 214.462 kb on + strand at 214.638 kb on + strand at 214.662 kb on - strand at 214.789 kb on + strand, within ECD_00185 at 214.879 kb on + strand, within ECD_00185 at 214.880 kb on - strand, within ECD_00185 at 214.880 kb on - strand, within ECD_00185
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 213,877 + ECD_00184 0.63 -0.7 213,970 + ECD_00184 0.68 -0.5 213,970 + ECD_00184 0.68 -0.6 213,970 + ECD_00184 0.68 -0.1 213,971 - ECD_00184 0.68 +0.2 213,971 - ECD_00184 0.68 +0.7 214,225 + ECD_00184 0.80 +1.6 214,241 + ECD_00184 0.80 +0.1 214,270 + ECD_00184 0.82 +0.5 214,277 - ECD_00184 0.82 -1.2 214,304 - ECD_00184 0.83 -0.1 214,304 - ECD_00184 0.83 +0.2 214,304 - ECD_00184 0.83 -0.3 214,405 + ECD_00184 0.88 +0.1 214,416 + ECD_00184 0.88 -0.2 214,462 + +1.2 214,462 + +0.2 214,638 + -0.5 214,662 - -1.9 214,789 + ECD_00185 0.18 +1.3 214,879 + ECD_00185 0.41 +0.9 214,880 - ECD_00185 0.41 +0.2 214,880 - ECD_00185 0.41 +0.9
Or see this region's nucleotide sequence