Experiment: Ox4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00019 and ECD_00020 are separated by 38 nucleotides ECD_00020 and ECD_00021 are separated by 12 nucleotides
ECD_00019: ECD_00019 - transcriptional activator of nhaA, at 18,714 to 19,619
_00019
ECD_00020: ECD_00020 - hypothetical protein, at 19,658 to 20,617
_00020
ECD_00021: ECD_00021 - putative usher protein, at 20,630 to 21,775
_00021
Position (kb) 19
20
21 Strain fitness (log2 ratio) -2
-1
0
1 at 18.728 kb on + strand at 18.736 kb on - strand at 18.751 kb on - strand at 18.765 kb on + strand at 18.765 kb on + strand at 18.805 kb on - strand, within ECD_00019 at 18.868 kb on + strand, within ECD_00019 at 18.872 kb on + strand, within ECD_00019 at 18.978 kb on + strand, within ECD_00019 at 18.978 kb on + strand, within ECD_00019 at 18.997 kb on + strand, within ECD_00019 at 18.998 kb on - strand, within ECD_00019 at 19.051 kb on + strand, within ECD_00019 at 19.051 kb on + strand, within ECD_00019 at 19.051 kb on + strand, within ECD_00019 at 19.051 kb on + strand, within ECD_00019 at 19.069 kb on + strand, within ECD_00019 at 19.132 kb on + strand, within ECD_00019 at 19.181 kb on + strand, within ECD_00019 at 19.182 kb on - strand, within ECD_00019 at 19.458 kb on + strand, within ECD_00019 at 19.654 kb on + strand at 19.660 kb on - strand at 19.660 kb on - strand at 19.715 kb on - strand at 19.722 kb on + strand at 19.959 kb on - strand, within ECD_00020 at 20.517 kb on - strand, within ECD_00020 at 20.852 kb on + strand, within ECD_00021 at 20.853 kb on - strand, within ECD_00021 at 21.201 kb on + strand, within ECD_00021 at 21.213 kb on - strand, within ECD_00021
Per-strain Table
Position Strand Gene LocusTag Fraction Ox4 remove 18,728 + +0.3 18,736 - -0.5 18,751 - +1.1 18,765 + +0.8 18,765 + +1.1 18,805 - ECD_00019 0.10 -0.4 18,868 + ECD_00019 0.17 +0.3 18,872 + ECD_00019 0.17 -0.4 18,978 + ECD_00019 0.29 +0.2 18,978 + ECD_00019 0.29 -0.9 18,997 + ECD_00019 0.31 -0.6 18,998 - ECD_00019 0.31 +0.2 19,051 + ECD_00019 0.37 +0.0 19,051 + ECD_00019 0.37 +0.6 19,051 + ECD_00019 0.37 +0.3 19,051 + ECD_00019 0.37 -0.7 19,069 + ECD_00019 0.39 -1.0 19,132 + ECD_00019 0.46 +0.9 19,181 + ECD_00019 0.52 -0.0 19,182 - ECD_00019 0.52 +0.3 19,458 + ECD_00019 0.82 -0.4 19,654 + -0.5 19,660 - +0.4 19,660 - -0.8 19,715 - +0.2 19,722 + -2.4 19,959 - ECD_00020 0.31 +0.7 20,517 - ECD_00020 0.89 -0.7 20,852 + ECD_00021 0.19 +1.0 20,853 - ECD_00021 0.19 +1.0 21,201 + ECD_00021 0.50 +0.3 21,213 - ECD_00021 0.51 -0.1
Or see this region's nucleotide sequence