Experiment: Bas32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04238 and ECD_04239 are separated by 2 nucleotides ECD_04239 and ECD_04240 are separated by 106 nucleotides ECD_04240 and ECD_04241 overlap by 10 nucleotides
ECD_04238: ECD_04238 - DNA biosynthesis protein, at 4,518,613 to 4,519,350
_04238
ECD_04239: ECD_04239 - DNA biosynthesis protein (primosomal protein I), at 4,519,353 to 4,519,892
_04239
ECD_04240: ECD_04240 - DUF3815 family inner membrane protein, at 4,519,999 to 4,520,472
_04240
ECD_04241: ECD_04241 - DUF1212 family inner membrane protein, at 4,520,463 to 4,521,233
_04241
Position (kb)
4519
4520
4521 Strain fitness (log2 ratio)
-1
0
1 at 4519.942 kb on - strand at 4519.945 kb on - strand at 4520.029 kb on + strand at 4520.029 kb on + strand at 4520.163 kb on + strand, within ECD_04240 at 4520.166 kb on - strand, within ECD_04240 at 4520.166 kb on - strand, within ECD_04240 at 4520.251 kb on - strand, within ECD_04240 at 4520.271 kb on + strand, within ECD_04240 at 4520.271 kb on + strand, within ECD_04240 at 4520.272 kb on - strand, within ECD_04240 at 4520.272 kb on - strand, within ECD_04240 at 4520.272 kb on - strand, within ECD_04240 at 4520.272 kb on - strand, within ECD_04240 at 4520.281 kb on - strand, within ECD_04240 at 4520.341 kb on + strand, within ECD_04240 at 4520.433 kb on + strand at 4520.433 kb on + strand at 4520.433 kb on + strand at 4520.433 kb on + strand at 4520.519 kb on + strand at 4520.579 kb on + strand, within ECD_04241 at 4520.580 kb on - strand, within ECD_04241 at 4520.580 kb on - strand, within ECD_04241 at 4520.774 kb on + strand, within ECD_04241 at 4520.776 kb on + strand, within ECD_04241 at 4520.776 kb on + strand, within ECD_04241 at 4520.777 kb on - strand, within ECD_04241 at 4520.777 kb on - strand, within ECD_04241 at 4520.898 kb on + strand, within ECD_04241 at 4520.899 kb on - strand, within ECD_04241 at 4520.899 kb on - strand, within ECD_04241 at 4520.899 kb on - strand, within ECD_04241 at 4520.929 kb on - strand, within ECD_04241 at 4520.938 kb on + strand, within ECD_04241 at 4520.939 kb on - strand, within ECD_04241 at 4520.999 kb on + strand, within ECD_04241 at 4520.999 kb on + strand, within ECD_04241 at 4520.999 kb on + strand, within ECD_04241 at 4520.999 kb on + strand, within ECD_04241 at 4521.000 kb on - strand, within ECD_04241 at 4521.003 kb on - strand, within ECD_04241 at 4521.003 kb on - strand, within ECD_04241 at 4521.056 kb on + strand, within ECD_04241 at 4521.086 kb on + strand, within ECD_04241 at 4521.195 kb on - strand at 4521.208 kb on - strand at 4521.250 kb on + strand at 4521.292 kb on - strand at 4521.467 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas32 remove 4,519,942 - +0.9 4,519,945 - +0.8 4,520,029 + +0.0 4,520,029 + +0.2 4,520,163 + ECD_04240 0.35 +1.1 4,520,166 - ECD_04240 0.35 -0.8 4,520,166 - ECD_04240 0.35 -0.4 4,520,251 - ECD_04240 0.53 -0.2 4,520,271 + ECD_04240 0.57 -0.6 4,520,271 + ECD_04240 0.57 -0.2 4,520,272 - ECD_04240 0.58 -0.5 4,520,272 - ECD_04240 0.58 -1.1 4,520,272 - ECD_04240 0.58 -0.5 4,520,272 - ECD_04240 0.58 +0.1 4,520,281 - ECD_04240 0.59 -0.9 4,520,341 + ECD_04240 0.72 -1.6 4,520,433 + +1.1 4,520,433 + +0.6 4,520,433 + +0.2 4,520,433 + -0.2 4,520,519 + +0.6 4,520,579 + ECD_04241 0.15 +0.7 4,520,580 - ECD_04241 0.15 -0.4 4,520,580 - ECD_04241 0.15 +0.9 4,520,774 + ECD_04241 0.40 +0.8 4,520,776 + ECD_04241 0.41 -0.2 4,520,776 + ECD_04241 0.41 +0.7 4,520,777 - ECD_04241 0.41 -1.1 4,520,777 - ECD_04241 0.41 -0.4 4,520,898 + ECD_04241 0.56 -0.3 4,520,899 - ECD_04241 0.57 +0.7 4,520,899 - ECD_04241 0.57 +1.4 4,520,899 - ECD_04241 0.57 -0.3 4,520,929 - ECD_04241 0.60 -0.9 4,520,938 + ECD_04241 0.62 +1.4 4,520,939 - ECD_04241 0.62 +0.0 4,520,999 + ECD_04241 0.70 +0.1 4,520,999 + ECD_04241 0.70 +0.1 4,520,999 + ECD_04241 0.70 +0.5 4,520,999 + ECD_04241 0.70 -0.1 4,521,000 - ECD_04241 0.70 -0.3 4,521,003 - ECD_04241 0.70 -0.1 4,521,003 - ECD_04241 0.70 -0.5 4,521,056 + ECD_04241 0.77 -0.3 4,521,086 + ECD_04241 0.81 +0.1 4,521,195 - -0.1 4,521,208 - +0.4 4,521,250 + +0.4 4,521,292 - -0.5 4,521,467 - -0.9
Or see this region's nucleotide sequence