Strain Fitness in Escherichia coli BL21 around ECD_04205

Experiment: Bas32

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04204 and ECD_04205 are separated by 115 nucleotidesECD_04205 and ECD_04206 are separated by 40 nucleotides ECD_04204: ECD_04204 - putative 2-hydroxyglutaryl-CoA dehydratase, at 4,473,978 to 4,475,129 _04204 ECD_04205: ECD_04205 - zinc-type alcohol dehydrogenase-like protein, at 4,475,245 to 4,476,525 _04205 ECD_04206: ECD_04206 - multidrug efflux system protein, at 4,476,566 to 4,477,798 _04206 Position (kb) 4475 4476 4477Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4474.261 kb on + strand, within ECD_04204at 4474.262 kb on - strand, within ECD_04204at 4474.520 kb on - strand, within ECD_04204at 4474.563 kb on + strand, within ECD_04204at 4474.564 kb on - strand, within ECD_04204at 4474.780 kb on + strand, within ECD_04204at 4474.780 kb on + strand, within ECD_04204at 4474.781 kb on - strand, within ECD_04204at 4474.781 kb on - strand, within ECD_04204at 4474.781 kb on - strand, within ECD_04204at 4474.840 kb on + strand, within ECD_04204at 4474.886 kb on + strand, within ECD_04204at 4475.003 kb on + strand, within ECD_04204at 4475.015 kb on - strandat 4475.015 kb on - strandat 4475.015 kb on - strandat 4475.157 kb on + strandat 4475.177 kb on - strandat 4475.179 kb on + strandat 4475.307 kb on + strandat 4475.341 kb on - strandat 4475.519 kb on - strand, within ECD_04205at 4475.778 kb on + strand, within ECD_04205at 4475.782 kb on - strand, within ECD_04205at 4475.782 kb on - strand, within ECD_04205at 4475.826 kb on + strand, within ECD_04205at 4476.001 kb on - strand, within ECD_04205at 4476.001 kb on - strand, within ECD_04205at 4476.069 kb on + strand, within ECD_04205at 4476.070 kb on - strand, within ECD_04205at 4476.519 kb on + strandat 4476.526 kb on - strandat 4476.537 kb on + strandat 4476.582 kb on - strandat 4476.748 kb on + strand, within ECD_04206at 4476.749 kb on - strand, within ECD_04206at 4476.749 kb on - strand, within ECD_04206at 4476.749 kb on - strand, within ECD_04206at 4476.753 kb on - strand, within ECD_04206at 4476.799 kb on + strand, within ECD_04206at 4476.950 kb on - strand, within ECD_04206at 4477.056 kb on - strand, within ECD_04206at 4477.116 kb on + strand, within ECD_04206at 4477.116 kb on + strand, within ECD_04206at 4477.116 kb on + strand, within ECD_04206at 4477.116 kb on + strand, within ECD_04206at 4477.117 kb on - strand, within ECD_04206at 4477.117 kb on - strand, within ECD_04206at 4477.122 kb on - strand, within ECD_04206at 4477.264 kb on + strand, within ECD_04206at 4477.431 kb on + strand, within ECD_04206at 4477.456 kb on + strand, within ECD_04206at 4477.456 kb on + strand, within ECD_04206at 4477.457 kb on - strand, within ECD_04206at 4477.498 kb on + strand, within ECD_04206

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas32
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4,474,261 + ECD_04204 0.25 +1.1
4,474,262 - ECD_04204 0.25 +0.3
4,474,520 - ECD_04204 0.47 -0.1
4,474,563 + ECD_04204 0.51 -0.0
4,474,564 - ECD_04204 0.51 +2.4
4,474,780 + ECD_04204 0.70 -0.4
4,474,780 + ECD_04204 0.70 +0.5
4,474,781 - ECD_04204 0.70 -3.0
4,474,781 - ECD_04204 0.70 +0.1
4,474,781 - ECD_04204 0.70 +0.4
4,474,840 + ECD_04204 0.75 -0.3
4,474,886 + ECD_04204 0.79 -0.1
4,475,003 + ECD_04204 0.89 +0.7
4,475,015 - -0.6
4,475,015 - -0.6
4,475,015 - -0.8
4,475,157 + -0.2
4,475,177 - -1.6
4,475,179 + +0.4
4,475,307 + -1.1
4,475,341 - +1.0
4,475,519 - ECD_04205 0.21 +0.4
4,475,778 + ECD_04205 0.42 -0.2
4,475,782 - ECD_04205 0.42 -0.2
4,475,782 - ECD_04205 0.42 -0.3
4,475,826 + ECD_04205 0.45 -0.3
4,476,001 - ECD_04205 0.59 +0.1
4,476,001 - ECD_04205 0.59 -0.4
4,476,069 + ECD_04205 0.64 +0.1
4,476,070 - ECD_04205 0.64 -0.2
4,476,519 + +0.7
4,476,526 - -0.9
4,476,537 + +0.5
4,476,582 - +0.4
4,476,748 + ECD_04206 0.15 -0.1
4,476,749 - ECD_04206 0.15 -0.3
4,476,749 - ECD_04206 0.15 +0.4
4,476,749 - ECD_04206 0.15 +0.1
4,476,753 - ECD_04206 0.15 +1.6
4,476,799 + ECD_04206 0.19 -0.4
4,476,950 - ECD_04206 0.31 +0.3
4,477,056 - ECD_04206 0.40 +1.3
4,477,116 + ECD_04206 0.45 -0.4
4,477,116 + ECD_04206 0.45 -0.5
4,477,116 + ECD_04206 0.45 +0.1
4,477,116 + ECD_04206 0.45 +0.5
4,477,117 - ECD_04206 0.45 -0.3
4,477,117 - ECD_04206 0.45 +0.7
4,477,122 - ECD_04206 0.45 -0.7
4,477,264 + ECD_04206 0.57 -0.2
4,477,431 + ECD_04206 0.70 +0.2
4,477,456 + ECD_04206 0.72 -0.2
4,477,456 + ECD_04206 0.72 -2.1
4,477,457 - ECD_04206 0.72 +0.1
4,477,498 + ECD_04206 0.76 -0.3

Or see this region's nucleotide sequence