Experiment: Bas32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03441 and ECD_03442 are separated by 5 nucleotides ECD_03442 and ECD_03443 are separated by 544 nucleotides
ECD_03441: ECD_03441 - signal-anchored membrane fusion protein (MFP) component of efflux pump, at 3,619,352 to 3,620,488
_03441
ECD_03442: ECD_03442 - DUF3302 family inner membrane protein, at 3,620,494 to 3,620,817
_03442
ECD_03443: ECD_03443 - aldehyde dehydrogenase B, at 3,621,362 to 3,622,900
_03443
Position (kb)
3620
3621 Strain fitness (log2 ratio)
-1
0
1 at 3619.545 kb on - strand, within ECD_03441 at 3619.553 kb on + strand, within ECD_03441 at 3619.553 kb on + strand, within ECD_03441 at 3619.554 kb on - strand, within ECD_03441 at 3619.597 kb on + strand, within ECD_03441 at 3619.598 kb on - strand, within ECD_03441 at 3619.622 kb on + strand, within ECD_03441 at 3619.622 kb on + strand, within ECD_03441 at 3619.628 kb on - strand, within ECD_03441 at 3619.642 kb on + strand, within ECD_03441 at 3619.732 kb on + strand, within ECD_03441 at 3619.732 kb on + strand, within ECD_03441 at 3619.732 kb on + strand, within ECD_03441 at 3619.733 kb on - strand, within ECD_03441 at 3619.770 kb on + strand, within ECD_03441 at 3619.803 kb on + strand, within ECD_03441 at 3619.803 kb on + strand, within ECD_03441 at 3619.804 kb on - strand, within ECD_03441 at 3619.804 kb on - strand, within ECD_03441 at 3619.804 kb on - strand, within ECD_03441 at 3619.826 kb on + strand, within ECD_03441 at 3619.844 kb on - strand, within ECD_03441 at 3619.846 kb on - strand, within ECD_03441 at 3620.021 kb on + strand, within ECD_03441 at 3620.021 kb on + strand, within ECD_03441 at 3620.055 kb on + strand, within ECD_03441 at 3620.098 kb on + strand, within ECD_03441 at 3620.099 kb on - strand, within ECD_03441 at 3620.118 kb on - strand, within ECD_03441 at 3620.216 kb on + strand, within ECD_03441 at 3620.217 kb on - strand, within ECD_03441 at 3620.217 kb on - strand, within ECD_03441 at 3620.243 kb on - strand, within ECD_03441 at 3620.378 kb on + strand at 3620.464 kb on - strand at 3620.464 kb on - strand at 3620.481 kb on - strand at 3620.492 kb on + strand at 3620.647 kb on - strand, within ECD_03442 at 3620.977 kb on + strand at 3620.999 kb on - strand at 3621.035 kb on + strand at 3621.041 kb on + strand at 3621.207 kb on + strand at 3621.207 kb on + strand at 3621.207 kb on + strand at 3621.208 kb on - strand at 3621.214 kb on - strand at 3621.228 kb on - strand at 3621.247 kb on - strand at 3621.271 kb on + strand at 3621.305 kb on + strand at 3621.314 kb on + strand at 3621.358 kb on + strand at 3621.359 kb on - strand at 3621.359 kb on - strand at 3621.360 kb on + strand at 3621.420 kb on + strand at 3621.507 kb on + strand at 3621.553 kb on + strand, within ECD_03443 at 3621.554 kb on - strand, within ECD_03443 at 3621.554 kb on - strand, within ECD_03443 at 3621.554 kb on - strand, within ECD_03443 at 3621.554 kb on - strand, within ECD_03443 at 3621.554 kb on - strand, within ECD_03443 at 3621.732 kb on + strand, within ECD_03443 at 3621.733 kb on - strand, within ECD_03443 at 3621.812 kb on - strand, within ECD_03443
Per-strain Table
Position Strand Gene LocusTag Fraction Bas32 remove 3,619,545 - ECD_03441 0.17 -0.1 3,619,553 + ECD_03441 0.18 -0.3 3,619,553 + ECD_03441 0.18 -0.1 3,619,554 - ECD_03441 0.18 +0.1 3,619,597 + ECD_03441 0.22 -0.4 3,619,598 - ECD_03441 0.22 +0.3 3,619,622 + ECD_03441 0.24 +0.7 3,619,622 + ECD_03441 0.24 +1.7 3,619,628 - ECD_03441 0.24 +0.7 3,619,642 + ECD_03441 0.26 +0.5 3,619,732 + ECD_03441 0.33 -1.0 3,619,732 + ECD_03441 0.33 +0.6 3,619,732 + ECD_03441 0.33 +0.6 3,619,733 - ECD_03441 0.34 -0.7 3,619,770 + ECD_03441 0.37 -0.2 3,619,803 + ECD_03441 0.40 -0.4 3,619,803 + ECD_03441 0.40 +0.3 3,619,804 - ECD_03441 0.40 +0.5 3,619,804 - ECD_03441 0.40 -0.3 3,619,804 - ECD_03441 0.40 +0.2 3,619,826 + ECD_03441 0.42 +0.4 3,619,844 - ECD_03441 0.43 +0.0 3,619,846 - ECD_03441 0.43 -0.3 3,620,021 + ECD_03441 0.59 +0.9 3,620,021 + ECD_03441 0.59 -0.3 3,620,055 + ECD_03441 0.62 +0.2 3,620,098 + ECD_03441 0.66 -0.2 3,620,099 - ECD_03441 0.66 -0.3 3,620,118 - ECD_03441 0.67 +0.0 3,620,216 + ECD_03441 0.76 -0.2 3,620,217 - ECD_03441 0.76 -0.1 3,620,217 - ECD_03441 0.76 -0.3 3,620,243 - ECD_03441 0.78 -0.8 3,620,378 + +0.3 3,620,464 - +0.2 3,620,464 - -1.3 3,620,481 - +0.9 3,620,492 + -0.7 3,620,647 - ECD_03442 0.47 +0.2 3,620,977 + +0.3 3,620,999 - +0.4 3,621,035 + +0.5 3,621,041 + +0.3 3,621,207 + -0.7 3,621,207 + -0.7 3,621,207 + -0.8 3,621,208 - +0.2 3,621,214 - +1.5 3,621,228 - +0.2 3,621,247 - +1.1 3,621,271 + +0.6 3,621,305 + -0.3 3,621,314 + -0.1 3,621,358 + -0.6 3,621,359 - +0.4 3,621,359 - -1.0 3,621,360 + -0.0 3,621,420 + +0.4 3,621,507 + -0.2 3,621,553 + ECD_03443 0.12 -0.0 3,621,554 - ECD_03443 0.12 +0.8 3,621,554 - ECD_03443 0.12 +0.3 3,621,554 - ECD_03443 0.12 -0.2 3,621,554 - ECD_03443 0.12 -0.4 3,621,554 - ECD_03443 0.12 +0.4 3,621,732 + ECD_03443 0.24 -0.4 3,621,733 - ECD_03443 0.24 +0.6 3,621,812 - ECD_03443 0.29 -0.3
Or see this region's nucleotide sequence