Strain Fitness in Escherichia coli BL21 around ECD_03442

Experiment: Bas32

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03441 and ECD_03442 are separated by 5 nucleotidesECD_03442 and ECD_03443 are separated by 544 nucleotides ECD_03441: ECD_03441 - signal-anchored membrane fusion protein (MFP) component of efflux pump, at 3,619,352 to 3,620,488 _03441 ECD_03442: ECD_03442 - DUF3302 family inner membrane protein, at 3,620,494 to 3,620,817 _03442 ECD_03443: ECD_03443 - aldehyde dehydrogenase B, at 3,621,362 to 3,622,900 _03443 Position (kb) 3620 3621Strain fitness (log2 ratio) -1 0 1at 3619.545 kb on - strand, within ECD_03441at 3619.553 kb on + strand, within ECD_03441at 3619.553 kb on + strand, within ECD_03441at 3619.554 kb on - strand, within ECD_03441at 3619.597 kb on + strand, within ECD_03441at 3619.598 kb on - strand, within ECD_03441at 3619.622 kb on + strand, within ECD_03441at 3619.622 kb on + strand, within ECD_03441at 3619.628 kb on - strand, within ECD_03441at 3619.642 kb on + strand, within ECD_03441at 3619.732 kb on + strand, within ECD_03441at 3619.732 kb on + strand, within ECD_03441at 3619.732 kb on + strand, within ECD_03441at 3619.733 kb on - strand, within ECD_03441at 3619.770 kb on + strand, within ECD_03441at 3619.803 kb on + strand, within ECD_03441at 3619.803 kb on + strand, within ECD_03441at 3619.804 kb on - strand, within ECD_03441at 3619.804 kb on - strand, within ECD_03441at 3619.804 kb on - strand, within ECD_03441at 3619.826 kb on + strand, within ECD_03441at 3619.844 kb on - strand, within ECD_03441at 3619.846 kb on - strand, within ECD_03441at 3620.021 kb on + strand, within ECD_03441at 3620.021 kb on + strand, within ECD_03441at 3620.055 kb on + strand, within ECD_03441at 3620.098 kb on + strand, within ECD_03441at 3620.099 kb on - strand, within ECD_03441at 3620.118 kb on - strand, within ECD_03441at 3620.216 kb on + strand, within ECD_03441at 3620.217 kb on - strand, within ECD_03441at 3620.217 kb on - strand, within ECD_03441at 3620.243 kb on - strand, within ECD_03441at 3620.378 kb on + strandat 3620.464 kb on - strandat 3620.464 kb on - strandat 3620.481 kb on - strandat 3620.492 kb on + strandat 3620.647 kb on - strand, within ECD_03442at 3620.977 kb on + strandat 3620.999 kb on - strandat 3621.035 kb on + strandat 3621.041 kb on + strandat 3621.207 kb on + strandat 3621.207 kb on + strandat 3621.207 kb on + strandat 3621.208 kb on - strandat 3621.214 kb on - strandat 3621.228 kb on - strandat 3621.247 kb on - strandat 3621.271 kb on + strandat 3621.305 kb on + strandat 3621.314 kb on + strandat 3621.358 kb on + strandat 3621.359 kb on - strandat 3621.359 kb on - strandat 3621.360 kb on + strandat 3621.420 kb on + strandat 3621.507 kb on + strandat 3621.553 kb on + strand, within ECD_03443at 3621.554 kb on - strand, within ECD_03443at 3621.554 kb on - strand, within ECD_03443at 3621.554 kb on - strand, within ECD_03443at 3621.554 kb on - strand, within ECD_03443at 3621.554 kb on - strand, within ECD_03443at 3621.732 kb on + strand, within ECD_03443at 3621.733 kb on - strand, within ECD_03443at 3621.812 kb on - strand, within ECD_03443

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas32
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3,619,545 - ECD_03441 0.17 -0.1
3,619,553 + ECD_03441 0.18 -0.3
3,619,553 + ECD_03441 0.18 -0.1
3,619,554 - ECD_03441 0.18 +0.1
3,619,597 + ECD_03441 0.22 -0.4
3,619,598 - ECD_03441 0.22 +0.3
3,619,622 + ECD_03441 0.24 +0.7
3,619,622 + ECD_03441 0.24 +1.7
3,619,628 - ECD_03441 0.24 +0.7
3,619,642 + ECD_03441 0.26 +0.5
3,619,732 + ECD_03441 0.33 -1.0
3,619,732 + ECD_03441 0.33 +0.6
3,619,732 + ECD_03441 0.33 +0.6
3,619,733 - ECD_03441 0.34 -0.7
3,619,770 + ECD_03441 0.37 -0.2
3,619,803 + ECD_03441 0.40 -0.4
3,619,803 + ECD_03441 0.40 +0.3
3,619,804 - ECD_03441 0.40 +0.5
3,619,804 - ECD_03441 0.40 -0.3
3,619,804 - ECD_03441 0.40 +0.2
3,619,826 + ECD_03441 0.42 +0.4
3,619,844 - ECD_03441 0.43 +0.0
3,619,846 - ECD_03441 0.43 -0.3
3,620,021 + ECD_03441 0.59 +0.9
3,620,021 + ECD_03441 0.59 -0.3
3,620,055 + ECD_03441 0.62 +0.2
3,620,098 + ECD_03441 0.66 -0.2
3,620,099 - ECD_03441 0.66 -0.3
3,620,118 - ECD_03441 0.67 +0.0
3,620,216 + ECD_03441 0.76 -0.2
3,620,217 - ECD_03441 0.76 -0.1
3,620,217 - ECD_03441 0.76 -0.3
3,620,243 - ECD_03441 0.78 -0.8
3,620,378 + +0.3
3,620,464 - +0.2
3,620,464 - -1.3
3,620,481 - +0.9
3,620,492 + -0.7
3,620,647 - ECD_03442 0.47 +0.2
3,620,977 + +0.3
3,620,999 - +0.4
3,621,035 + +0.5
3,621,041 + +0.3
3,621,207 + -0.7
3,621,207 + -0.7
3,621,207 + -0.8
3,621,208 - +0.2
3,621,214 - +1.5
3,621,228 - +0.2
3,621,247 - +1.1
3,621,271 + +0.6
3,621,305 + -0.3
3,621,314 + -0.1
3,621,358 + -0.6
3,621,359 - +0.4
3,621,359 - -1.0
3,621,360 + -0.0
3,621,420 + +0.4
3,621,507 + -0.2
3,621,553 + ECD_03443 0.12 -0.0
3,621,554 - ECD_03443 0.12 +0.8
3,621,554 - ECD_03443 0.12 +0.3
3,621,554 - ECD_03443 0.12 -0.2
3,621,554 - ECD_03443 0.12 -0.4
3,621,554 - ECD_03443 0.12 +0.4
3,621,732 + ECD_03443 0.24 -0.4
3,621,733 - ECD_03443 0.24 +0.6
3,621,812 - ECD_03443 0.29 -0.3

Or see this region's nucleotide sequence