Experiment: Bas32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02982 and ECD_02983 are separated by 25 nucleotides ECD_02983 and ECD_02984 are separated by 21 nucleotides
ECD_02982: ECD_02982 - propionate kinase/acetate kinase C, anaerobic, at 3,128,751 to 3,129,959
_02982
ECD_02983: ECD_02983 - L-threonine/L-serine transporter, at 3,129,985 to 3,131,316
_02983
ECD_02984: ECD_02984 - L-threonine dehydratase, catabolic, at 3,131,338 to 3,132,327
_02984
Position (kb)
3129
3130
3131
3132 Strain fitness (log2 ratio)
-1
0
1 at 3128.996 kb on + strand, within ECD_02982 at 3129.016 kb on - strand, within ECD_02982 at 3129.123 kb on + strand, within ECD_02982 at 3129.147 kb on - strand, within ECD_02982 at 3129.167 kb on + strand, within ECD_02982 at 3129.174 kb on + strand, within ECD_02982 at 3129.300 kb on - strand, within ECD_02982 at 3129.454 kb on - strand, within ECD_02982 at 3129.492 kb on + strand, within ECD_02982 at 3129.537 kb on + strand, within ECD_02982 at 3129.592 kb on - strand, within ECD_02982 at 3129.660 kb on - strand, within ECD_02982 at 3129.825 kb on + strand, within ECD_02982 at 3129.870 kb on + strand at 3129.871 kb on - strand at 3129.930 kb on - strand at 3129.930 kb on - strand at 3130.065 kb on - strand at 3130.065 kb on - strand at 3130.097 kb on + strand at 3130.098 kb on - strand at 3130.098 kb on - strand at 3130.221 kb on + strand, within ECD_02983 at 3130.222 kb on - strand, within ECD_02983 at 3130.314 kb on - strand, within ECD_02983 at 3130.447 kb on - strand, within ECD_02983 at 3130.447 kb on - strand, within ECD_02983 at 3130.488 kb on + strand, within ECD_02983 at 3130.501 kb on - strand, within ECD_02983 at 3130.567 kb on - strand, within ECD_02983 at 3130.567 kb on - strand, within ECD_02983 at 3130.602 kb on - strand, within ECD_02983 at 3130.614 kb on + strand, within ECD_02983 at 3130.615 kb on - strand, within ECD_02983 at 3130.813 kb on + strand, within ECD_02983 at 3130.814 kb on - strand, within ECD_02983 at 3130.821 kb on - strand, within ECD_02983 at 3130.948 kb on - strand, within ECD_02983 at 3130.963 kb on - strand, within ECD_02983 at 3130.963 kb on - strand, within ECD_02983 at 3130.963 kb on - strand, within ECD_02983 at 3130.963 kb on - strand, within ECD_02983 at 3130.963 kb on - strand, within ECD_02983 at 3131.006 kb on + strand, within ECD_02983 at 3131.006 kb on + strand, within ECD_02983 at 3131.007 kb on - strand, within ECD_02983 at 3131.124 kb on - strand, within ECD_02983 at 3131.124 kb on - strand, within ECD_02983 at 3131.139 kb on - strand, within ECD_02983 at 3131.139 kb on - strand, within ECD_02983 at 3131.139 kb on - strand, within ECD_02983 at 3131.239 kb on + strand at 3131.263 kb on - strand at 3131.294 kb on - strand at 3131.311 kb on - strand at 3131.322 kb on - strand at 3131.509 kb on + strand, within ECD_02984 at 3131.654 kb on - strand, within ECD_02984 at 3131.808 kb on - strand, within ECD_02984 at 3132.139 kb on - strand, within ECD_02984
Per-strain Table
Position Strand Gene LocusTag Fraction Bas32 remove 3,128,996 + ECD_02982 0.20 +0.6 3,129,016 - ECD_02982 0.22 +0.3 3,129,123 + ECD_02982 0.31 +0.6 3,129,147 - ECD_02982 0.33 +0.7 3,129,167 + ECD_02982 0.34 -0.6 3,129,174 + ECD_02982 0.35 +0.9 3,129,300 - ECD_02982 0.45 +0.1 3,129,454 - ECD_02982 0.58 +0.1 3,129,492 + ECD_02982 0.61 -1.1 3,129,537 + ECD_02982 0.65 -0.0 3,129,592 - ECD_02982 0.70 -1.1 3,129,660 - ECD_02982 0.75 +0.7 3,129,825 + ECD_02982 0.89 -0.3 3,129,870 + -0.2 3,129,871 - +0.2 3,129,930 - -0.4 3,129,930 - +0.2 3,130,065 - -1.5 3,130,065 - +1.3 3,130,097 + -0.1 3,130,098 - +0.1 3,130,098 - -1.2 3,130,221 + ECD_02983 0.18 +0.6 3,130,222 - ECD_02983 0.18 -0.1 3,130,314 - ECD_02983 0.25 -0.3 3,130,447 - ECD_02983 0.35 +0.5 3,130,447 - ECD_02983 0.35 +0.2 3,130,488 + ECD_02983 0.38 -0.7 3,130,501 - ECD_02983 0.39 -0.2 3,130,567 - ECD_02983 0.44 +0.1 3,130,567 - ECD_02983 0.44 -1.4 3,130,602 - ECD_02983 0.46 +0.6 3,130,614 + ECD_02983 0.47 -0.0 3,130,615 - ECD_02983 0.47 -1.1 3,130,813 + ECD_02983 0.62 +0.3 3,130,814 - ECD_02983 0.62 +0.1 3,130,821 - ECD_02983 0.63 -0.1 3,130,948 - ECD_02983 0.72 +0.7 3,130,963 - ECD_02983 0.73 +0.2 3,130,963 - ECD_02983 0.73 -0.3 3,130,963 - ECD_02983 0.73 -0.0 3,130,963 - ECD_02983 0.73 -0.2 3,130,963 - ECD_02983 0.73 +0.4 3,131,006 + ECD_02983 0.77 -0.6 3,131,006 + ECD_02983 0.77 -1.3 3,131,007 - ECD_02983 0.77 -0.5 3,131,124 - ECD_02983 0.86 -0.1 3,131,124 - ECD_02983 0.86 -0.9 3,131,139 - ECD_02983 0.87 -0.6 3,131,139 - ECD_02983 0.87 -1.2 3,131,139 - ECD_02983 0.87 -0.1 3,131,239 + -0.6 3,131,263 - -0.9 3,131,294 - -0.5 3,131,311 - +1.4 3,131,322 - -0.3 3,131,509 + ECD_02984 0.17 +0.5 3,131,654 - ECD_02984 0.32 +0.8 3,131,808 - ECD_02984 0.47 -0.9 3,132,139 - ECD_02984 0.81 +0.1
Or see this region's nucleotide sequence