Strain Fitness in Escherichia coli BL21 around ECD_02983

Experiment: Bas32

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02982 and ECD_02983 are separated by 25 nucleotidesECD_02983 and ECD_02984 are separated by 21 nucleotides ECD_02982: ECD_02982 - propionate kinase/acetate kinase C, anaerobic, at 3,128,751 to 3,129,959 _02982 ECD_02983: ECD_02983 - L-threonine/L-serine transporter, at 3,129,985 to 3,131,316 _02983 ECD_02984: ECD_02984 - L-threonine dehydratase, catabolic, at 3,131,338 to 3,132,327 _02984 Position (kb) 3129 3130 3131 3132Strain fitness (log2 ratio) -1 0 1at 3128.996 kb on + strand, within ECD_02982at 3129.016 kb on - strand, within ECD_02982at 3129.123 kb on + strand, within ECD_02982at 3129.147 kb on - strand, within ECD_02982at 3129.167 kb on + strand, within ECD_02982at 3129.174 kb on + strand, within ECD_02982at 3129.300 kb on - strand, within ECD_02982at 3129.454 kb on - strand, within ECD_02982at 3129.492 kb on + strand, within ECD_02982at 3129.537 kb on + strand, within ECD_02982at 3129.592 kb on - strand, within ECD_02982at 3129.660 kb on - strand, within ECD_02982at 3129.825 kb on + strand, within ECD_02982at 3129.870 kb on + strandat 3129.871 kb on - strandat 3129.930 kb on - strandat 3129.930 kb on - strandat 3130.065 kb on - strandat 3130.065 kb on - strandat 3130.097 kb on + strandat 3130.098 kb on - strandat 3130.098 kb on - strandat 3130.221 kb on + strand, within ECD_02983at 3130.222 kb on - strand, within ECD_02983at 3130.314 kb on - strand, within ECD_02983at 3130.447 kb on - strand, within ECD_02983at 3130.447 kb on - strand, within ECD_02983at 3130.488 kb on + strand, within ECD_02983at 3130.501 kb on - strand, within ECD_02983at 3130.567 kb on - strand, within ECD_02983at 3130.567 kb on - strand, within ECD_02983at 3130.602 kb on - strand, within ECD_02983at 3130.614 kb on + strand, within ECD_02983at 3130.615 kb on - strand, within ECD_02983at 3130.813 kb on + strand, within ECD_02983at 3130.814 kb on - strand, within ECD_02983at 3130.821 kb on - strand, within ECD_02983at 3130.948 kb on - strand, within ECD_02983at 3130.963 kb on - strand, within ECD_02983at 3130.963 kb on - strand, within ECD_02983at 3130.963 kb on - strand, within ECD_02983at 3130.963 kb on - strand, within ECD_02983at 3130.963 kb on - strand, within ECD_02983at 3131.006 kb on + strand, within ECD_02983at 3131.006 kb on + strand, within ECD_02983at 3131.007 kb on - strand, within ECD_02983at 3131.124 kb on - strand, within ECD_02983at 3131.124 kb on - strand, within ECD_02983at 3131.139 kb on - strand, within ECD_02983at 3131.139 kb on - strand, within ECD_02983at 3131.139 kb on - strand, within ECD_02983at 3131.239 kb on + strandat 3131.263 kb on - strandat 3131.294 kb on - strandat 3131.311 kb on - strandat 3131.322 kb on - strandat 3131.509 kb on + strand, within ECD_02984at 3131.654 kb on - strand, within ECD_02984at 3131.808 kb on - strand, within ECD_02984at 3132.139 kb on - strand, within ECD_02984

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas32
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3,128,996 + ECD_02982 0.20 +0.6
3,129,016 - ECD_02982 0.22 +0.3
3,129,123 + ECD_02982 0.31 +0.6
3,129,147 - ECD_02982 0.33 +0.7
3,129,167 + ECD_02982 0.34 -0.6
3,129,174 + ECD_02982 0.35 +0.9
3,129,300 - ECD_02982 0.45 +0.1
3,129,454 - ECD_02982 0.58 +0.1
3,129,492 + ECD_02982 0.61 -1.1
3,129,537 + ECD_02982 0.65 -0.0
3,129,592 - ECD_02982 0.70 -1.1
3,129,660 - ECD_02982 0.75 +0.7
3,129,825 + ECD_02982 0.89 -0.3
3,129,870 + -0.2
3,129,871 - +0.2
3,129,930 - -0.4
3,129,930 - +0.2
3,130,065 - -1.5
3,130,065 - +1.3
3,130,097 + -0.1
3,130,098 - +0.1
3,130,098 - -1.2
3,130,221 + ECD_02983 0.18 +0.6
3,130,222 - ECD_02983 0.18 -0.1
3,130,314 - ECD_02983 0.25 -0.3
3,130,447 - ECD_02983 0.35 +0.5
3,130,447 - ECD_02983 0.35 +0.2
3,130,488 + ECD_02983 0.38 -0.7
3,130,501 - ECD_02983 0.39 -0.2
3,130,567 - ECD_02983 0.44 +0.1
3,130,567 - ECD_02983 0.44 -1.4
3,130,602 - ECD_02983 0.46 +0.6
3,130,614 + ECD_02983 0.47 -0.0
3,130,615 - ECD_02983 0.47 -1.1
3,130,813 + ECD_02983 0.62 +0.3
3,130,814 - ECD_02983 0.62 +0.1
3,130,821 - ECD_02983 0.63 -0.1
3,130,948 - ECD_02983 0.72 +0.7
3,130,963 - ECD_02983 0.73 +0.2
3,130,963 - ECD_02983 0.73 -0.3
3,130,963 - ECD_02983 0.73 -0.0
3,130,963 - ECD_02983 0.73 -0.2
3,130,963 - ECD_02983 0.73 +0.4
3,131,006 + ECD_02983 0.77 -0.6
3,131,006 + ECD_02983 0.77 -1.3
3,131,007 - ECD_02983 0.77 -0.5
3,131,124 - ECD_02983 0.86 -0.1
3,131,124 - ECD_02983 0.86 -0.9
3,131,139 - ECD_02983 0.87 -0.6
3,131,139 - ECD_02983 0.87 -1.2
3,131,139 - ECD_02983 0.87 -0.1
3,131,239 + -0.6
3,131,263 - -0.9
3,131,294 - -0.5
3,131,311 - +1.4
3,131,322 - -0.3
3,131,509 + ECD_02984 0.17 +0.5
3,131,654 - ECD_02984 0.32 +0.8
3,131,808 - ECD_02984 0.47 -0.9
3,132,139 - ECD_02984 0.81 +0.1

Or see this region's nucleotide sequence