Strain Fitness in Escherichia coli BL21 around ECD_00976

Experiment: Bas32

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00975 and ECD_00976 overlap by 4 nucleotidesECD_00976 and ECD_00977 are separated by 18 nucleotidesECD_00977 and ECD_00978 overlap by 4 nucleotides ECD_00975: ECD_00975 - hydrogenase 1, small subunit, at 1,037,228 to 1,038,346 _00975 ECD_00976: ECD_00976 - hydrogenase 1, large subunit, at 1,038,343 to 1,040,136 _00976 ECD_00977: ECD_00977 - hydrogenase 1, b-type cytochrome subunit, at 1,040,155 to 1,040,862 _00977 ECD_00978: ECD_00978 - hydrogenase 1 maturation protease, at 1,040,859 to 1,041,446 _00978 Position (kb) 1038 1039 1040 1041Strain fitness (log2 ratio) -2 -1 0 1at 1037.391 kb on + strand, within ECD_00975at 1037.501 kb on - strand, within ECD_00975at 1037.562 kb on - strand, within ECD_00975at 1037.593 kb on + strand, within ECD_00975at 1037.842 kb on + strand, within ECD_00975at 1037.843 kb on - strand, within ECD_00975at 1037.843 kb on - strand, within ECD_00975at 1037.846 kb on + strand, within ECD_00975at 1037.846 kb on + strand, within ECD_00975at 1037.847 kb on - strand, within ECD_00975at 1037.847 kb on - strand, within ECD_00975at 1037.906 kb on + strand, within ECD_00975at 1037.907 kb on - strand, within ECD_00975at 1037.907 kb on - strand, within ECD_00975at 1037.907 kb on - strand, within ECD_00975at 1038.042 kb on - strand, within ECD_00975at 1038.042 kb on - strand, within ECD_00975at 1038.042 kb on - strand, within ECD_00975at 1038.290 kb on - strandat 1038.301 kb on + strandat 1038.522 kb on - strandat 1038.579 kb on + strand, within ECD_00976at 1038.630 kb on + strand, within ECD_00976at 1038.633 kb on + strand, within ECD_00976at 1038.634 kb on - strand, within ECD_00976at 1038.655 kb on - strand, within ECD_00976at 1038.669 kb on + strand, within ECD_00976at 1038.746 kb on + strand, within ECD_00976at 1038.747 kb on - strand, within ECD_00976at 1039.131 kb on + strand, within ECD_00976at 1039.237 kb on - strand, within ECD_00976at 1039.252 kb on + strand, within ECD_00976at 1039.462 kb on + strand, within ECD_00976at 1040.189 kb on - strandat 1040.309 kb on - strand, within ECD_00977at 1040.309 kb on - strand, within ECD_00977at 1040.317 kb on + strand, within ECD_00977at 1040.318 kb on - strand, within ECD_00977at 1040.318 kb on - strand, within ECD_00977at 1040.319 kb on + strand, within ECD_00977at 1040.488 kb on + strand, within ECD_00977at 1040.522 kb on + strand, within ECD_00977at 1040.752 kb on + strand, within ECD_00977at 1040.844 kb on + strandat 1040.971 kb on - strand, within ECD_00978at 1040.993 kb on + strand, within ECD_00978at 1040.993 kb on + strand, within ECD_00978at 1041.093 kb on + strand, within ECD_00978

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas32
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1,037,391 + ECD_00975 0.15 -0.8
1,037,501 - ECD_00975 0.24 +1.3
1,037,562 - ECD_00975 0.30 -0.8
1,037,593 + ECD_00975 0.33 +0.6
1,037,842 + ECD_00975 0.55 -0.4
1,037,843 - ECD_00975 0.55 +0.4
1,037,843 - ECD_00975 0.55 +0.3
1,037,846 + ECD_00975 0.55 +0.7
1,037,846 + ECD_00975 0.55 -0.1
1,037,847 - ECD_00975 0.55 -0.5
1,037,847 - ECD_00975 0.55 +1.0
1,037,906 + ECD_00975 0.61 -0.5
1,037,907 - ECD_00975 0.61 +0.4
1,037,907 - ECD_00975 0.61 +0.3
1,037,907 - ECD_00975 0.61 +0.2
1,038,042 - ECD_00975 0.73 -0.1
1,038,042 - ECD_00975 0.73 -0.9
1,038,042 - ECD_00975 0.73 +0.6
1,038,290 - +0.2
1,038,301 + +0.1
1,038,522 - +0.7
1,038,579 + ECD_00976 0.13 +0.3
1,038,630 + ECD_00976 0.16 +1.0
1,038,633 + ECD_00976 0.16 +0.4
1,038,634 - ECD_00976 0.16 +1.3
1,038,655 - ECD_00976 0.17 +0.2
1,038,669 + ECD_00976 0.18 +0.1
1,038,746 + ECD_00976 0.22 -0.5
1,038,747 - ECD_00976 0.23 -0.3
1,039,131 + ECD_00976 0.44 +0.3
1,039,237 - ECD_00976 0.50 -0.0
1,039,252 + ECD_00976 0.51 -0.1
1,039,462 + ECD_00976 0.62 +0.2
1,040,189 - +0.0
1,040,309 - ECD_00977 0.22 +0.6
1,040,309 - ECD_00977 0.22 -0.5
1,040,317 + ECD_00977 0.23 -0.7
1,040,318 - ECD_00977 0.23 -0.5
1,040,318 - ECD_00977 0.23 +0.5
1,040,319 + ECD_00977 0.23 +0.8
1,040,488 + ECD_00977 0.47 -1.9
1,040,522 + ECD_00977 0.52 +0.3
1,040,752 + ECD_00977 0.84 -0.1
1,040,844 + +0.1
1,040,971 - ECD_00978 0.19 -0.4
1,040,993 + ECD_00978 0.23 -1.5
1,040,993 + ECD_00978 0.23 -0.7
1,041,093 + ECD_00978 0.40 -0.4

Or see this region's nucleotide sequence