Experiment: Bas32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00974 and ECD_t00023 are separated by 206 nucleotides ECD_t00023 and ECD_00975 are separated by 426 nucleotides ECD_00975 and ECD_00976 overlap by 4 nucleotides
ECD_00974: ECD_00974 - Modulator of FtsH protease, inner membrane protein, at 1,035,848 to 1,036,507
_00974
ECD_t00023: ECD_t00023 - tRNA-Ser, at 1,036,714 to 1,036,801
_t00023
ECD_00975: ECD_00975 - hydrogenase 1, small subunit, at 1,037,228 to 1,038,346
_00975
ECD_00976: ECD_00976 - hydrogenase 1, large subunit, at 1,038,343 to 1,040,136
_00976
Position (kb)
1037
1038
1039 Strain fitness (log2 ratio)
-1
0
1 at 1036.435 kb on - strand, within ECD_00974 at 1036.439 kb on - strand, within ECD_00974 at 1036.463 kb on - strand at 1036.475 kb on - strand at 1036.475 kb on - strand at 1036.475 kb on - strand at 1036.555 kb on - strand at 1036.645 kb on - strand at 1036.694 kb on - strand at 1036.694 kb on - strand at 1036.711 kb on - strand at 1036.711 kb on - strand at 1036.711 kb on - strand at 1036.995 kb on - strand at 1037.070 kb on + strand at 1037.076 kb on + strand at 1037.076 kb on + strand at 1037.297 kb on + strand at 1037.298 kb on - strand at 1037.391 kb on + strand, within ECD_00975 at 1037.501 kb on - strand, within ECD_00975 at 1037.562 kb on - strand, within ECD_00975 at 1037.593 kb on + strand, within ECD_00975 at 1037.842 kb on + strand, within ECD_00975 at 1037.843 kb on - strand, within ECD_00975 at 1037.843 kb on - strand, within ECD_00975 at 1037.846 kb on + strand, within ECD_00975 at 1037.846 kb on + strand, within ECD_00975 at 1037.847 kb on - strand, within ECD_00975 at 1037.847 kb on - strand, within ECD_00975 at 1037.906 kb on + strand, within ECD_00975 at 1037.907 kb on - strand, within ECD_00975 at 1037.907 kb on - strand, within ECD_00975 at 1037.907 kb on - strand, within ECD_00975 at 1038.042 kb on - strand, within ECD_00975 at 1038.042 kb on - strand, within ECD_00975 at 1038.042 kb on - strand, within ECD_00975 at 1038.290 kb on - strand at 1038.301 kb on + strand at 1038.522 kb on - strand at 1038.579 kb on + strand, within ECD_00976 at 1038.630 kb on + strand, within ECD_00976 at 1038.633 kb on + strand, within ECD_00976 at 1038.634 kb on - strand, within ECD_00976 at 1038.655 kb on - strand, within ECD_00976 at 1038.669 kb on + strand, within ECD_00976 at 1038.746 kb on + strand, within ECD_00976 at 1038.747 kb on - strand, within ECD_00976 at 1039.131 kb on + strand, within ECD_00976 at 1039.237 kb on - strand, within ECD_00976 at 1039.252 kb on + strand, within ECD_00976
Per-strain Table
Position Strand Gene LocusTag Fraction Bas32 remove 1,036,435 - ECD_00974 0.89 +0.5 1,036,439 - ECD_00974 0.90 -0.3 1,036,463 - +0.0 1,036,475 - +1.5 1,036,475 - -0.8 1,036,475 - +1.2 1,036,555 - +0.4 1,036,645 - -0.6 1,036,694 - +0.1 1,036,694 - -0.2 1,036,711 - +0.1 1,036,711 - +0.5 1,036,711 - -0.5 1,036,995 - +0.3 1,037,070 + +0.6 1,037,076 + +0.7 1,037,076 + -0.0 1,037,297 + -0.1 1,037,298 - +0.2 1,037,391 + ECD_00975 0.15 -0.8 1,037,501 - ECD_00975 0.24 +1.3 1,037,562 - ECD_00975 0.30 -0.8 1,037,593 + ECD_00975 0.33 +0.6 1,037,842 + ECD_00975 0.55 -0.4 1,037,843 - ECD_00975 0.55 +0.4 1,037,843 - ECD_00975 0.55 +0.3 1,037,846 + ECD_00975 0.55 +0.7 1,037,846 + ECD_00975 0.55 -0.1 1,037,847 - ECD_00975 0.55 -0.5 1,037,847 - ECD_00975 0.55 +1.0 1,037,906 + ECD_00975 0.61 -0.5 1,037,907 - ECD_00975 0.61 +0.4 1,037,907 - ECD_00975 0.61 +0.3 1,037,907 - ECD_00975 0.61 +0.2 1,038,042 - ECD_00975 0.73 -0.1 1,038,042 - ECD_00975 0.73 -0.9 1,038,042 - ECD_00975 0.73 +0.6 1,038,290 - +0.2 1,038,301 + +0.1 1,038,522 - +0.7 1,038,579 + ECD_00976 0.13 +0.3 1,038,630 + ECD_00976 0.16 +1.0 1,038,633 + ECD_00976 0.16 +0.4 1,038,634 - ECD_00976 0.16 +1.3 1,038,655 - ECD_00976 0.17 +0.2 1,038,669 + ECD_00976 0.18 +0.1 1,038,746 + ECD_00976 0.22 -0.5 1,038,747 - ECD_00976 0.23 -0.3 1,039,131 + ECD_00976 0.44 +0.3 1,039,237 - ECD_00976 0.50 -0.0 1,039,252 + ECD_00976 0.51 -0.1
Or see this region's nucleotide sequence