Experiment: Bas32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00592 and ECD_00593 are separated by 168 nucleotides ECD_00593 and ECD_00594 are separated by 54 nucleotides ECD_00594 and ECD_00595 are separated by 92 nucleotides
ECD_00592: ECD_00592 - phospholipid:lipid A palmitoyltransferase, at 616,923 to 617,483
_00592
ECD_00593: ECD_00593 - constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA-binding protein, at 617,652 to 617,861
_00593
ECD_00594: ECD_00594 - fluoride efflux channel, dual topology membrane protein, at 617,916 to 618,299
_00594
ECD_00595: ECD_00595 - putative NAD(P)-binding amidase-type enzyme YbeM (C-N hydrolase family), at 618,392 to 619,180
_00595
Position (kb) 617
618 Strain fitness (log2 ratio) -1
0
1 at 616.881 kb on + strand at 617.206 kb on - strand, within ECD_00592 at 617.206 kb on - strand, within ECD_00592 at 617.421 kb on + strand, within ECD_00592 at 617.422 kb on - strand, within ECD_00592 at 617.437 kb on - strand at 617.437 kb on - strand at 617.627 kb on + strand at 617.638 kb on + strand at 617.639 kb on - strand at 617.639 kb on - strand at 617.675 kb on + strand, within ECD_00593 at 617.675 kb on + strand, within ECD_00593 at 617.675 kb on + strand, within ECD_00593 at 617.774 kb on + strand, within ECD_00593 at 617.849 kb on - strand at 617.860 kb on - strand at 617.918 kb on - strand at 618.028 kb on - strand, within ECD_00594 at 618.157 kb on - strand, within ECD_00594 at 618.157 kb on - strand, within ECD_00594 at 618.295 kb on - strand at 618.339 kb on + strand at 618.350 kb on - strand at 618.490 kb on - strand, within ECD_00595 at 618.613 kb on + strand, within ECD_00595 at 618.614 kb on - strand, within ECD_00595 at 618.673 kb on + strand, within ECD_00595 at 618.732 kb on - strand, within ECD_00595 at 618.840 kb on + strand, within ECD_00595 at 618.841 kb on - strand, within ECD_00595
Per-strain Table
Position Strand Gene LocusTag Fraction Bas32 remove 616,881 + -0.4 617,206 - ECD_00592 0.50 -0.6 617,206 - ECD_00592 0.50 +0.4 617,421 + ECD_00592 0.89 -0.6 617,422 - ECD_00592 0.89 -0.2 617,437 - -1.3 617,437 - +0.0 617,627 + +0.1 617,638 + +0.3 617,639 - +0.4 617,639 - +0.0 617,675 + ECD_00593 0.11 -0.4 617,675 + ECD_00593 0.11 -0.2 617,675 + ECD_00593 0.11 -0.9 617,774 + ECD_00593 0.58 -0.4 617,849 - +0.4 617,860 - +0.1 617,918 - -0.0 618,028 - ECD_00594 0.29 -0.4 618,157 - ECD_00594 0.63 +0.7 618,157 - ECD_00594 0.63 +0.2 618,295 - +0.7 618,339 + -0.5 618,350 - +0.3 618,490 - ECD_00595 0.12 +0.1 618,613 + ECD_00595 0.28 -0.0 618,614 - ECD_00595 0.28 +0.3 618,673 + ECD_00595 0.36 +0.9 618,732 - ECD_00595 0.43 -0.8 618,840 + ECD_00595 0.57 -1.2 618,841 - ECD_00595 0.57 +0.7
Or see this region's nucleotide sequence