Experiment: Bas32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00435 and ECD_00436 are separated by 261 nucleotides ECD_00436 and ECD_00437 are separated by 2 nucleotides
ECD_00435: ECD_00435 - copper transporter, at 478,022 to 480,526
_00435
ECD_00436: ECD_00436 - glutaminase 1, at 480,788 to 481,720
_00436
ECD_00437: ECD_00437 - putative amino acid transporter, at 481,723 to 483,015
_00437
Position (kb) 480
481
482 Strain fitness (log2 ratio) -1
0
1 at 480.115 kb on + strand, within ECD_00435 at 480.526 kb on + strand at 480.527 kb on - strand at 480.540 kb on - strand at 480.792 kb on + strand at 480.872 kb on + strand at 480.894 kb on + strand, within ECD_00436 at 480.894 kb on + strand, within ECD_00436 at 480.895 kb on - strand, within ECD_00436 at 480.944 kb on + strand, within ECD_00436 at 480.944 kb on + strand, within ECD_00436 at 480.944 kb on + strand, within ECD_00436 at 481.098 kb on + strand, within ECD_00436 at 481.206 kb on + strand, within ECD_00436 at 481.240 kb on - strand, within ECD_00436 at 481.314 kb on - strand, within ECD_00436 at 481.331 kb on + strand, within ECD_00436 at 481.332 kb on - strand, within ECD_00436 at 481.361 kb on + strand, within ECD_00436 at 481.362 kb on - strand, within ECD_00436 at 481.390 kb on + strand, within ECD_00436 at 481.391 kb on - strand, within ECD_00436 at 481.484 kb on + strand, within ECD_00436 at 481.517 kb on + strand, within ECD_00436 at 481.700 kb on + strand at 481.701 kb on - strand at 481.702 kb on + strand at 481.711 kb on + strand at 481.712 kb on - strand at 481.740 kb on + strand at 481.740 kb on + strand at 481.844 kb on + strand at 481.913 kb on - strand, within ECD_00437 at 481.934 kb on - strand, within ECD_00437 at 482.068 kb on + strand, within ECD_00437 at 482.165 kb on + strand, within ECD_00437 at 482.271 kb on + strand, within ECD_00437 at 482.316 kb on + strand, within ECD_00437 at 482.443 kb on + strand, within ECD_00437 at 482.443 kb on + strand, within ECD_00437 at 482.443 kb on + strand, within ECD_00437 at 482.444 kb on - strand, within ECD_00437 at 482.676 kb on + strand, within ECD_00437 at 482.698 kb on - strand, within ECD_00437 at 482.698 kb on - strand, within ECD_00437
Per-strain Table
Position Strand Gene LocusTag Fraction Bas32 remove 480,115 + ECD_00435 0.84 -0.4 480,526 + -0.3 480,527 - +0.4 480,540 - -0.2 480,792 + +0.1 480,872 + -0.6 480,894 + ECD_00436 0.11 -1.7 480,894 + ECD_00436 0.11 -0.3 480,895 - ECD_00436 0.11 -0.3 480,944 + ECD_00436 0.17 -1.0 480,944 + ECD_00436 0.17 -0.1 480,944 + ECD_00436 0.17 -1.0 481,098 + ECD_00436 0.33 +0.3 481,206 + ECD_00436 0.45 -0.6 481,240 - ECD_00436 0.48 -0.8 481,314 - ECD_00436 0.56 -0.3 481,331 + ECD_00436 0.58 -0.6 481,332 - ECD_00436 0.58 -0.1 481,361 + ECD_00436 0.61 -0.3 481,362 - ECD_00436 0.62 +1.0 481,390 + ECD_00436 0.65 -0.8 481,391 - ECD_00436 0.65 -0.6 481,484 + ECD_00436 0.75 +0.2 481,517 + ECD_00436 0.78 +0.7 481,700 + -0.6 481,701 - -1.4 481,702 + -1.3 481,711 + +0.1 481,712 - -0.1 481,740 + +1.6 481,740 + +0.2 481,844 + +1.0 481,913 - ECD_00437 0.15 +1.0 481,934 - ECD_00437 0.16 +0.9 482,068 + ECD_00437 0.27 +0.6 482,165 + ECD_00437 0.34 -0.7 482,271 + ECD_00437 0.42 +0.5 482,316 + ECD_00437 0.46 +0.3 482,443 + ECD_00437 0.56 +1.3 482,443 + ECD_00437 0.56 -1.0 482,443 + ECD_00437 0.56 -0.8 482,444 - ECD_00437 0.56 +0.8 482,676 + ECD_00437 0.74 -0.0 482,698 - ECD_00437 0.75 +0.5 482,698 - ECD_00437 0.75 -0.1
Or see this region's nucleotide sequence