Strain Fitness in Escherichia coli BL21 around ECD_03181

Experiment: Bas26

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03178 and ECD_03179 are separated by 9 nucleotidesECD_03179 and ECD_03180 are separated by 7 nucleotidesECD_03180 and ECD_03181 overlap by 4 nucleotidesECD_03181 and ECD_03182 overlap by 8 nucleotidesECD_03182 and ECD_03183 overlap by 8 nucleotides ECD_03178: ECD_03178 - general secretory pathway component, cryptic, at 3,320,051 to 3,321,247 _03178 ECD_03179: ECD_03179 - pseudopilin, cryptic, general secretion pathway, at 3,321,257 to 3,321,694 _03179 ECD_03180: ECD_03180 - putative general secretory pathway component, cryptic, at 3,321,702 to 3,322,211 _03180 ECD_03181: ECD_03181 - general secretory pathway component, cryptic, at 3,322,208 to 3,322,585 _03181 ECD_03182: ECD_03182 - putative general secretory pathway component, cryptic, at 3,322,578 to 3,323,165 _03182 ECD_03183: ECD_03183 - general secretory pathway component, cryptic, at 3,323,158 to 3,324,141 _03183 Position (kb) 3322 3323Strain fitness (log2 ratio) -2 -1 0 1at 3321.287 kb on - strandat 3321.301 kb on + strand, within ECD_03179at 3321.354 kb on + strand, within ECD_03179at 3321.354 kb on + strand, within ECD_03179at 3321.428 kb on - strand, within ECD_03179at 3321.431 kb on + strand, within ECD_03179at 3321.431 kb on + strand, within ECD_03179at 3321.431 kb on + strand, within ECD_03179at 3321.432 kb on - strand, within ECD_03179at 3321.432 kb on - strand, within ECD_03179at 3321.432 kb on - strand, within ECD_03179at 3321.432 kb on - strand, within ECD_03179at 3321.432 kb on - strand, within ECD_03179at 3321.486 kb on + strand, within ECD_03179at 3321.487 kb on - strand, within ECD_03179at 3321.522 kb on - strand, within ECD_03179at 3321.522 kb on - strand, within ECD_03179at 3321.522 kb on - strand, within ECD_03179at 3321.523 kb on + strand, within ECD_03179at 3321.524 kb on - strand, within ECD_03179at 3321.536 kb on + strand, within ECD_03179at 3321.537 kb on - strand, within ECD_03179at 3321.538 kb on + strand, within ECD_03179at 3321.539 kb on - strand, within ECD_03179at 3321.575 kb on + strand, within ECD_03179at 3321.575 kb on + strand, within ECD_03179at 3321.575 kb on + strand, within ECD_03179at 3321.575 kb on + strand, within ECD_03179at 3321.576 kb on - strand, within ECD_03179at 3321.608 kb on + strand, within ECD_03179at 3321.608 kb on + strand, within ECD_03179at 3321.608 kb on + strand, within ECD_03179at 3321.609 kb on - strand, within ECD_03179at 3321.609 kb on - strand, within ECD_03179at 3321.609 kb on - strand, within ECD_03179at 3321.692 kb on + strandat 3321.789 kb on + strand, within ECD_03180at 3321.790 kb on - strand, within ECD_03180at 3321.860 kb on - strand, within ECD_03180at 3321.973 kb on + strand, within ECD_03180at 3322.043 kb on + strand, within ECD_03180at 3322.154 kb on - strand, within ECD_03180at 3322.294 kb on + strand, within ECD_03181at 3322.295 kb on - strand, within ECD_03181at 3322.423 kb on - strand, within ECD_03181at 3322.425 kb on + strand, within ECD_03181at 3322.426 kb on - strand, within ECD_03181at 3322.426 kb on - strand, within ECD_03181at 3322.584 kb on - strandat 3322.646 kb on + strand, within ECD_03182at 3322.647 kb on - strand, within ECD_03182at 3322.647 kb on - strand, within ECD_03182at 3322.729 kb on + strand, within ECD_03182at 3322.793 kb on + strand, within ECD_03182at 3322.826 kb on + strand, within ECD_03182at 3322.826 kb on + strand, within ECD_03182at 3322.827 kb on - strand, within ECD_03182at 3322.833 kb on - strand, within ECD_03182at 3322.899 kb on + strand, within ECD_03182at 3322.899 kb on + strand, within ECD_03182at 3322.913 kb on + strand, within ECD_03182at 3322.920 kb on + strand, within ECD_03182at 3322.935 kb on - strand, within ECD_03182at 3322.935 kb on - strand, within ECD_03182at 3323.071 kb on - strand, within ECD_03182at 3323.081 kb on - strand, within ECD_03182at 3323.098 kb on + strand, within ECD_03182at 3323.098 kb on + strand, within ECD_03182at 3323.153 kb on + strandat 3323.153 kb on + strandat 3323.154 kb on - strandat 3323.163 kb on + strandat 3323.195 kb on + strandat 3323.195 kb on + strandat 3323.196 kb on - strandat 3323.196 kb on - strandat 3323.196 kb on - strandat 3323.204 kb on + strandat 3323.205 kb on - strandat 3323.280 kb on - strand, within ECD_03183at 3323.302 kb on + strand, within ECD_03183at 3323.308 kb on - strand, within ECD_03183at 3323.355 kb on + strand, within ECD_03183at 3323.535 kb on - strand, within ECD_03183at 3323.535 kb on - strand, within ECD_03183

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas26
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3,321,287 - -0.5
3,321,301 + ECD_03179 0.10 -0.8
3,321,354 + ECD_03179 0.22 +0.5
3,321,354 + ECD_03179 0.22 -0.4
3,321,428 - ECD_03179 0.39 +0.8
3,321,431 + ECD_03179 0.40 -0.3
3,321,431 + ECD_03179 0.40 -0.2
3,321,431 + ECD_03179 0.40 -0.0
3,321,432 - ECD_03179 0.40 +0.0
3,321,432 - ECD_03179 0.40 +0.4
3,321,432 - ECD_03179 0.40 -0.3
3,321,432 - ECD_03179 0.40 +1.1
3,321,432 - ECD_03179 0.40 +0.0
3,321,486 + ECD_03179 0.52 -0.3
3,321,487 - ECD_03179 0.53 +1.1
3,321,522 - ECD_03179 0.61 -0.2
3,321,522 - ECD_03179 0.61 +0.1
3,321,522 - ECD_03179 0.61 -0.0
3,321,523 + ECD_03179 0.61 +0.1
3,321,524 - ECD_03179 0.61 +0.2
3,321,536 + ECD_03179 0.64 -0.1
3,321,537 - ECD_03179 0.64 +0.1
3,321,538 + ECD_03179 0.64 +0.5
3,321,539 - ECD_03179 0.64 -1.2
3,321,575 + ECD_03179 0.73 +0.4
3,321,575 + ECD_03179 0.73 -0.4
3,321,575 + ECD_03179 0.73 +0.3
3,321,575 + ECD_03179 0.73 -0.7
3,321,576 - ECD_03179 0.73 -0.0
3,321,608 + ECD_03179 0.80 -0.7
3,321,608 + ECD_03179 0.80 +1.1
3,321,608 + ECD_03179 0.80 +0.4
3,321,609 - ECD_03179 0.80 +0.3
3,321,609 - ECD_03179 0.80 +0.3
3,321,609 - ECD_03179 0.80 +1.1
3,321,692 + -0.3
3,321,789 + ECD_03180 0.17 +0.1
3,321,790 - ECD_03180 0.17 +0.9
3,321,860 - ECD_03180 0.31 +1.7
3,321,973 + ECD_03180 0.53 +0.6
3,322,043 + ECD_03180 0.67 +0.0
3,322,154 - ECD_03180 0.89 +0.5
3,322,294 + ECD_03181 0.23 -0.3
3,322,295 - ECD_03181 0.23 -0.2
3,322,423 - ECD_03181 0.57 +0.2
3,322,425 + ECD_03181 0.57 -0.5
3,322,426 - ECD_03181 0.58 -0.7
3,322,426 - ECD_03181 0.58 -0.1
3,322,584 - -1.4
3,322,646 + ECD_03182 0.12 -0.1
3,322,647 - ECD_03182 0.12 +0.4
3,322,647 - ECD_03182 0.12 -0.1
3,322,729 + ECD_03182 0.26 -0.3
3,322,793 + ECD_03182 0.37 +0.2
3,322,826 + ECD_03182 0.42 +1.1
3,322,826 + ECD_03182 0.42 -0.1
3,322,827 - ECD_03182 0.42 +1.7
3,322,833 - ECD_03182 0.43 +0.2
3,322,899 + ECD_03182 0.55 +1.0
3,322,899 + ECD_03182 0.55 -0.2
3,322,913 + ECD_03182 0.57 -2.3
3,322,920 + ECD_03182 0.58 +0.2
3,322,935 - ECD_03182 0.61 +0.3
3,322,935 - ECD_03182 0.61 +0.4
3,323,071 - ECD_03182 0.84 +0.5
3,323,081 - ECD_03182 0.86 +0.3
3,323,098 + ECD_03182 0.88 -0.1
3,323,098 + ECD_03182 0.88 +0.1
3,323,153 + -0.2
3,323,153 + -1.4
3,323,154 - -0.6
3,323,163 + -0.4
3,323,195 + +1.4
3,323,195 + +0.3
3,323,196 - +0.2
3,323,196 - -0.3
3,323,196 - +1.2
3,323,204 + -0.4
3,323,205 - -2.5
3,323,280 - ECD_03183 0.12 -0.6
3,323,302 + ECD_03183 0.15 +0.7
3,323,308 - ECD_03183 0.15 -2.2
3,323,355 + ECD_03183 0.20 -0.1
3,323,535 - ECD_03183 0.38 +0.7
3,323,535 - ECD_03183 0.38 +0.0

Or see this region's nucleotide sequence