Strain Fitness in Escherichia coli BL21 around ECD_02280

Experiment: Bas26

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02279 and ECD_02280 are separated by 4 nucleotidesECD_02280 and ECD_02281 are separated by 55 nucleotides ECD_02279: ECD_02279 - response regulator in two-component regulatory system with EvgS, at 2,361,643 to 2,362,257 _02279 ECD_02280: ECD_02280 - hybrid sensory histidine kinase in two-component regulatory system with EvgA, at 2,362,262 to 2,365,855 _02280 ECD_02281: ECD_02281 - acetyl-CoA:oxalate CoA-transferase, at 2,365,911 to 2,367,056 _02281 Position (kb) 2362 2363 2364 2365 2366Strain fitness (log2 ratio) -1 0 1at 2361.601 kb on + strandat 2361.642 kb on + strandat 2361.657 kb on + strandat 2361.859 kb on - strand, within ECD_02279at 2362.386 kb on + strandat 2362.450 kb on + strandat 2363.916 kb on + strand, within ECD_02280at 2365.269 kb on - strand, within ECD_02280at 2365.470 kb on + strand, within ECD_02280at 2365.470 kb on + strand, within ECD_02280at 2365.912 kb on + strandat 2366.095 kb on - strand, within ECD_02281at 2366.353 kb on + strand, within ECD_02281at 2366.401 kb on + strand, within ECD_02281at 2366.552 kb on + strand, within ECD_02281at 2366.630 kb on - strand, within ECD_02281at 2366.684 kb on - strand, within ECD_02281at 2366.745 kb on - strand, within ECD_02281

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas26
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2,361,601 + +0.3
2,361,642 + +0.4
2,361,657 + -0.6
2,361,859 - ECD_02279 0.35 +0.2
2,362,386 + -0.1
2,362,450 + +0.9
2,363,916 + ECD_02280 0.46 -0.1
2,365,269 - ECD_02280 0.84 -0.0
2,365,470 + ECD_02280 0.89 -0.9
2,365,470 + ECD_02280 0.89 -0.7
2,365,912 + +0.6
2,366,095 - ECD_02281 0.16 -0.7
2,366,353 + ECD_02281 0.39 +0.2
2,366,401 + ECD_02281 0.43 +0.2
2,366,552 + ECD_02281 0.56 -0.4
2,366,630 - ECD_02281 0.63 +0.6
2,366,684 - ECD_02281 0.67 +0.4
2,366,745 - ECD_02281 0.73 +0.2

Or see this region's nucleotide sequence