Strain Fitness in Escherichia coli BL21 around ECD_02176

Experiment: Bas26

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02175 and ECD_02176 are separated by 99 nucleotidesECD_02176 and ECD_02177 are separated by 278 nucleotidesECD_02177 and ECD_02178 are separated by 38 nucleotides ECD_02175: ECD_02175 - inactive PncC family protein, at 2,252,605 to 2,253,807 _02175 ECD_02176: ECD_02176 - outer membrane protein, putative porin, at 2,253,907 to 2,254,449 _02176 ECD_02177: ECD_02177 - nucleoside triphosphatase, at 2,254,728 to 2,255,153 _02177 ECD_02178: ECD_02178 - putative LPS core heptose(II)-phosphate phosphatase, at 2,255,192 to 2,255,794 _02178 Position (kb) 2253 2254 2255Strain fitness (log2 ratio) -2 -1 0 1at 2253.205 kb on + strand, within ECD_02175at 2253.206 kb on - strand, within ECD_02175at 2253.381 kb on + strand, within ECD_02175at 2253.767 kb on - strandat 2253.855 kb on + strandat 2253.865 kb on + strandat 2254.098 kb on - strand, within ECD_02176at 2254.098 kb on - strand, within ECD_02176at 2254.098 kb on - strand, within ECD_02176at 2254.098 kb on - strand, within ECD_02176at 2254.098 kb on - strand, within ECD_02176at 2254.098 kb on - strand, within ECD_02176at 2254.101 kb on - strand, within ECD_02176at 2254.181 kb on + strand, within ECD_02176at 2254.356 kb on - strand, within ECD_02176at 2254.502 kb on - strandat 2254.552 kb on - strandat 2254.747 kb on + strandat 2254.776 kb on + strand, within ECD_02177at 2255.068 kb on - strand, within ECD_02177at 2255.273 kb on - strand, within ECD_02178at 2255.303 kb on - strand, within ECD_02178at 2255.303 kb on - strand, within ECD_02178at 2255.305 kb on - strand, within ECD_02178at 2255.305 kb on - strand, within ECD_02178at 2255.305 kb on - strand, within ECD_02178at 2255.305 kb on - strand, within ECD_02178at 2255.305 kb on - strand, within ECD_02178

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas26
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2,253,205 + ECD_02175 0.50 +0.2
2,253,206 - ECD_02175 0.50 +0.5
2,253,381 + ECD_02175 0.65 +0.5
2,253,767 - -0.0
2,253,855 + -0.4
2,253,865 + -0.3
2,254,098 - ECD_02176 0.35 +1.0
2,254,098 - ECD_02176 0.35 +0.8
2,254,098 - ECD_02176 0.35 +0.7
2,254,098 - ECD_02176 0.35 -0.1
2,254,098 - ECD_02176 0.35 +1.0
2,254,098 - ECD_02176 0.35 -2.1
2,254,101 - ECD_02176 0.36 +0.4
2,254,181 + ECD_02176 0.50 +0.4
2,254,356 - ECD_02176 0.83 +0.4
2,254,502 - -0.2
2,254,552 - +0.1
2,254,747 + +1.3
2,254,776 + ECD_02177 0.11 +0.3
2,255,068 - ECD_02177 0.80 -0.3
2,255,273 - ECD_02178 0.13 -0.9
2,255,303 - ECD_02178 0.18 -0.2
2,255,303 - ECD_02178 0.18 -0.4
2,255,305 - ECD_02178 0.19 +0.1
2,255,305 - ECD_02178 0.19 -0.3
2,255,305 - ECD_02178 0.19 +0.8
2,255,305 - ECD_02178 0.19 -0.9
2,255,305 - ECD_02178 0.19 +0.1

Or see this region's nucleotide sequence