Experiment: Bas26
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02153 and ECD_02154 are separated by 0 nucleotides ECD_02154 and ECD_02155 overlap by 67 nucleotides ECD_02155 and ECD_02156 overlap by 4 nucleotides
ECD_02153: ECD_02153 - tandem DUF2300 domain protein, putative host defense protein, at 2,218,509 to 2,220,158
_02153
ECD_02154: ECD_02154 - putative membrane protein, at 2,220,159 to 2,224,763
_02154
ECD_02155: ECD_02155 - DUF1175 family protein, putative host defense protein, at 2,224,697 to 2,225,320
_02155
ECD_02156: ECD_02156 - DUF2138 family protein, putative host defense protein, at 2,225,317 to 2,227,005
_02156
Position (kb)
2220
2221
2222
2223
2224
2225 Strain fitness (log2 ratio)
-2
-1
0
1 at 2219.182 kb on + strand, within ECD_02153 at 2219.235 kb on + strand, within ECD_02153 at 2219.282 kb on + strand, within ECD_02153 at 2219.307 kb on - strand, within ECD_02153 at 2219.683 kb on - strand, within ECD_02153 at 2219.801 kb on + strand, within ECD_02153 at 2219.824 kb on + strand, within ECD_02153 at 2219.888 kb on - strand, within ECD_02153 at 2219.888 kb on - strand, within ECD_02153 at 2220.009 kb on + strand at 2220.050 kb on - strand at 2220.087 kb on + strand at 2220.088 kb on - strand at 2220.160 kb on + strand at 2220.221 kb on - strand at 2220.326 kb on + strand at 2220.327 kb on - strand at 2220.328 kb on + strand at 2220.329 kb on - strand at 2220.518 kb on - strand at 2220.563 kb on + strand at 2220.599 kb on - strand at 2220.599 kb on - strand at 2220.688 kb on - strand, within ECD_02154 at 2220.764 kb on + strand, within ECD_02154 at 2220.823 kb on + strand, within ECD_02154 at 2220.824 kb on - strand, within ECD_02154 at 2220.824 kb on - strand, within ECD_02154 at 2220.889 kb on - strand, within ECD_02154 at 2220.923 kb on + strand, within ECD_02154 at 2220.986 kb on - strand, within ECD_02154 at 2221.248 kb on + strand, within ECD_02154 at 2221.259 kb on + strand, within ECD_02154 at 2221.290 kb on - strand, within ECD_02154 at 2221.745 kb on + strand, within ECD_02154 at 2221.789 kb on - strand, within ECD_02154 at 2221.789 kb on - strand, within ECD_02154 at 2222.012 kb on - strand, within ECD_02154 at 2222.104 kb on + strand, within ECD_02154 at 2222.105 kb on - strand, within ECD_02154 at 2222.545 kb on + strand, within ECD_02154 at 2222.545 kb on + strand, within ECD_02154 at 2222.546 kb on - strand, within ECD_02154 at 2222.546 kb on - strand, within ECD_02154 at 2222.628 kb on + strand, within ECD_02154 at 2222.698 kb on - strand, within ECD_02154 at 2222.848 kb on - strand, within ECD_02154 at 2222.878 kb on + strand, within ECD_02154 at 2222.878 kb on + strand, within ECD_02154 at 2222.878 kb on + strand, within ECD_02154 at 2223.039 kb on - strand, within ECD_02154 at 2223.063 kb on + strand, within ECD_02154 at 2223.189 kb on + strand, within ECD_02154 at 2223.190 kb on - strand, within ECD_02154 at 2223.436 kb on + strand, within ECD_02154 at 2223.436 kb on + strand, within ECD_02154 at 2223.437 kb on - strand, within ECD_02154 at 2223.437 kb on - strand, within ECD_02154 at 2223.461 kb on + strand, within ECD_02154 at 2223.462 kb on - strand, within ECD_02154 at 2223.462 kb on - strand, within ECD_02154 at 2223.462 kb on - strand, within ECD_02154 at 2223.463 kb on + strand, within ECD_02154 at 2223.464 kb on - strand, within ECD_02154 at 2223.490 kb on - strand, within ECD_02154 at 2223.496 kb on + strand, within ECD_02154 at 2223.742 kb on + strand, within ECD_02154 at 2223.829 kb on - strand, within ECD_02154 at 2223.831 kb on - strand, within ECD_02154 at 2223.831 kb on - strand, within ECD_02154 at 2224.083 kb on - strand, within ECD_02154 at 2224.084 kb on + strand, within ECD_02154 at 2224.084 kb on + strand, within ECD_02154 at 2224.084 kb on + strand, within ECD_02154 at 2224.084 kb on + strand, within ECD_02154 at 2224.085 kb on - strand, within ECD_02154 at 2224.085 kb on - strand, within ECD_02154 at 2224.236 kb on + strand, within ECD_02154 at 2224.236 kb on + strand, within ECD_02154 at 2224.253 kb on + strand, within ECD_02154 at 2224.275 kb on + strand, within ECD_02154 at 2224.382 kb on + strand at 2224.472 kb on + strand at 2224.845 kb on + strand, within ECD_02155 at 2224.931 kb on + strand, within ECD_02155 at 2224.960 kb on - strand, within ECD_02155 at 2225.216 kb on + strand, within ECD_02155 at 2225.432 kb on - strand at 2225.432 kb on - strand at 2225.529 kb on + strand, within ECD_02156 at 2225.531 kb on + strand, within ECD_02156 at 2225.532 kb on - strand, within ECD_02156 at 2225.532 kb on - strand, within ECD_02156
Per-strain Table
Position Strand Gene LocusTag Fraction Bas26 remove 2,219,182 + ECD_02153 0.41 +0.6 2,219,235 + ECD_02153 0.44 -0.4 2,219,282 + ECD_02153 0.47 -0.1 2,219,307 - ECD_02153 0.48 +1.3 2,219,683 - ECD_02153 0.71 +1.3 2,219,801 + ECD_02153 0.78 -0.3 2,219,824 + ECD_02153 0.80 +0.4 2,219,888 - ECD_02153 0.84 +0.9 2,219,888 - ECD_02153 0.84 +0.2 2,220,009 + +0.1 2,220,050 - +0.3 2,220,087 + +0.8 2,220,088 - -0.0 2,220,160 + -1.1 2,220,221 - +0.9 2,220,326 + +0.6 2,220,327 - +0.6 2,220,328 + +0.2 2,220,329 - -0.2 2,220,518 - +0.5 2,220,563 + -1.0 2,220,599 - +0.4 2,220,599 - -0.4 2,220,688 - ECD_02154 0.11 +0.4 2,220,764 + ECD_02154 0.13 +1.5 2,220,823 + ECD_02154 0.14 +0.1 2,220,824 - ECD_02154 0.14 -0.7 2,220,824 - ECD_02154 0.14 +0.5 2,220,889 - ECD_02154 0.16 +0.1 2,220,923 + ECD_02154 0.17 +1.3 2,220,986 - ECD_02154 0.18 -0.2 2,221,248 + ECD_02154 0.24 +0.3 2,221,259 + ECD_02154 0.24 -0.7 2,221,290 - ECD_02154 0.25 +1.1 2,221,745 + ECD_02154 0.34 -0.2 2,221,789 - ECD_02154 0.35 +0.8 2,221,789 - ECD_02154 0.35 +0.5 2,222,012 - ECD_02154 0.40 +0.1 2,222,104 + ECD_02154 0.42 -0.6 2,222,105 - ECD_02154 0.42 -0.8 2,222,545 + ECD_02154 0.52 +0.4 2,222,545 + ECD_02154 0.52 +0.3 2,222,546 - ECD_02154 0.52 -0.1 2,222,546 - ECD_02154 0.52 -0.5 2,222,628 + ECD_02154 0.54 +0.4 2,222,698 - ECD_02154 0.55 -1.4 2,222,848 - ECD_02154 0.58 -1.3 2,222,878 + ECD_02154 0.59 +1.2 2,222,878 + ECD_02154 0.59 +0.0 2,222,878 + ECD_02154 0.59 -0.9 2,223,039 - ECD_02154 0.63 -0.9 2,223,063 + ECD_02154 0.63 +0.2 2,223,189 + ECD_02154 0.66 +1.3 2,223,190 - ECD_02154 0.66 +1.2 2,223,436 + ECD_02154 0.71 -0.2 2,223,436 + ECD_02154 0.71 -0.2 2,223,437 - ECD_02154 0.71 +0.6 2,223,437 - ECD_02154 0.71 +1.2 2,223,461 + ECD_02154 0.72 +0.5 2,223,462 - ECD_02154 0.72 -0.9 2,223,462 - ECD_02154 0.72 -0.1 2,223,462 - ECD_02154 0.72 -0.0 2,223,463 + ECD_02154 0.72 +0.7 2,223,464 - ECD_02154 0.72 -0.6 2,223,490 - ECD_02154 0.72 +0.9 2,223,496 + ECD_02154 0.72 -0.4 2,223,742 + ECD_02154 0.78 -1.1 2,223,829 - ECD_02154 0.80 +0.2 2,223,831 - ECD_02154 0.80 -0.1 2,223,831 - ECD_02154 0.80 -0.5 2,224,083 - ECD_02154 0.85 -2.4 2,224,084 + ECD_02154 0.85 -0.7 2,224,084 + ECD_02154 0.85 +0.1 2,224,084 + ECD_02154 0.85 -0.6 2,224,084 + ECD_02154 0.85 +0.4 2,224,085 - ECD_02154 0.85 -0.3 2,224,085 - ECD_02154 0.85 -1.4 2,224,236 + ECD_02154 0.89 +0.0 2,224,236 + ECD_02154 0.89 -0.1 2,224,253 + ECD_02154 0.89 +0.6 2,224,275 + ECD_02154 0.89 -0.1 2,224,382 + +0.7 2,224,472 + +0.2 2,224,845 + ECD_02155 0.24 -1.0 2,224,931 + ECD_02155 0.38 +1.4 2,224,960 - ECD_02155 0.42 +1.2 2,225,216 + ECD_02155 0.83 +1.4 2,225,432 - +0.9 2,225,432 - -0.1 2,225,529 + ECD_02156 0.13 -0.2 2,225,531 + ECD_02156 0.13 +0.7 2,225,532 - ECD_02156 0.13 -0.3 2,225,532 - ECD_02156 0.13 +0.1
Or see this region's nucleotide sequence