Experiment: Bas26
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02050 and ECD_02051 overlap by 4 nucleotides ECD_02051 and ECD_02052 are separated by 124 nucleotides ECD_02052 and ECD_02053 are separated by 40 nucleotides
ECD_02050: ECD_02050 - VMA domain putative YehL ATPase stimulator, at 2,102,829 to 2,103,965
_02050
ECD_02051: ECD_02051 - hypothetical protein, at 2,103,962 to 2,105,962
_02051
ECD_02052: ECD_02052 - lipoprotein, DUF1307 family, at 2,106,087 to 2,106,548
_02052
ECD_02053: ECD_02053 - DUF1456 family protein, at 2,106,589 to 2,107,059
_02053
Position (kb)
2103
2104
2105
2106 Strain fitness (log2 ratio)
-2
-1
0
1 at 2103.159 kb on - strand, within ECD_02050 at 2103.339 kb on - strand, within ECD_02050 at 2103.973 kb on - strand at 2103.987 kb on + strand at 2103.987 kb on + strand at 2104.190 kb on - strand, within ECD_02051 at 2104.495 kb on - strand, within ECD_02051 at 2104.551 kb on + strand, within ECD_02051 at 2104.552 kb on - strand, within ECD_02051 at 2104.631 kb on + strand, within ECD_02051 at 2104.632 kb on - strand, within ECD_02051 at 2104.656 kb on + strand, within ECD_02051 at 2104.684 kb on + strand, within ECD_02051 at 2104.812 kb on - strand, within ECD_02051 at 2104.990 kb on + strand, within ECD_02051 at 2104.991 kb on - strand, within ECD_02051 at 2105.315 kb on + strand, within ECD_02051 at 2105.371 kb on - strand, within ECD_02051 at 2105.443 kb on - strand, within ECD_02051 at 2105.746 kb on + strand, within ECD_02051 at 2105.792 kb on - strand at 2106.027 kb on - strand at 2106.032 kb on - strand at 2106.101 kb on + strand at 2106.219 kb on + strand, within ECD_02052 at 2106.219 kb on + strand, within ECD_02052 at 2106.219 kb on + strand, within ECD_02052 at 2106.226 kb on - strand, within ECD_02052 at 2106.245 kb on + strand, within ECD_02052 at 2106.494 kb on + strand, within ECD_02052
Per-strain Table
Position Strand Gene LocusTag Fraction Bas26 remove 2,103,159 - ECD_02050 0.29 -0.1 2,103,339 - ECD_02050 0.45 -1.8 2,103,973 - -1.2 2,103,987 + +0.7 2,103,987 + -0.7 2,104,190 - ECD_02051 0.11 +0.3 2,104,495 - ECD_02051 0.27 -0.4 2,104,551 + ECD_02051 0.29 +0.3 2,104,552 - ECD_02051 0.29 +0.9 2,104,631 + ECD_02051 0.33 -0.3 2,104,632 - ECD_02051 0.33 +0.5 2,104,656 + ECD_02051 0.35 +0.1 2,104,684 + ECD_02051 0.36 -0.4 2,104,812 - ECD_02051 0.42 -0.3 2,104,990 + ECD_02051 0.51 +0.7 2,104,991 - ECD_02051 0.51 -0.0 2,105,315 + ECD_02051 0.68 +0.1 2,105,371 - ECD_02051 0.70 -1.3 2,105,443 - ECD_02051 0.74 -1.2 2,105,746 + ECD_02051 0.89 +0.4 2,105,792 - +0.9 2,106,027 - +0.5 2,106,032 - -0.8 2,106,101 + +0.5 2,106,219 + ECD_02052 0.29 +0.5 2,106,219 + ECD_02052 0.29 +0.3 2,106,219 + ECD_02052 0.29 -0.9 2,106,226 - ECD_02052 0.30 +0.7 2,106,245 + ECD_02052 0.34 -0.3 2,106,494 + ECD_02052 0.88 +0.1
Or see this region's nucleotide sequence