Strain Fitness in Escherichia coli BL21 around ECD_02050

Experiment: Bas26

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02049 and ECD_02050 overlap by 8 nucleotidesECD_02050 and ECD_02051 overlap by 4 nucleotides ECD_02049: ECD_02049 - uncharacterized protein, at 2,100,557 to 2,102,836 _02049 ECD_02050: ECD_02050 - VMA domain putative YehL ATPase stimulator, at 2,102,829 to 2,103,965 _02050 ECD_02051: ECD_02051 - hypothetical protein, at 2,103,962 to 2,105,962 _02051 Position (kb) 2102 2103 2104Strain fitness (log2 ratio) -2 -1 0 1at 2102.011 kb on + strand, within ECD_02049at 2102.055 kb on + strand, within ECD_02049at 2102.127 kb on + strand, within ECD_02049at 2102.178 kb on + strand, within ECD_02049at 2102.310 kb on + strand, within ECD_02049at 2102.310 kb on + strand, within ECD_02049at 2102.427 kb on + strand, within ECD_02049at 2102.428 kb on - strand, within ECD_02049at 2102.589 kb on + strand, within ECD_02049at 2102.634 kb on + strandat 2103.159 kb on - strand, within ECD_02050at 2103.339 kb on - strand, within ECD_02050at 2103.973 kb on - strandat 2103.987 kb on + strandat 2103.987 kb on + strandat 2104.190 kb on - strand, within ECD_02051at 2104.495 kb on - strand, within ECD_02051at 2104.551 kb on + strand, within ECD_02051at 2104.552 kb on - strand, within ECD_02051at 2104.631 kb on + strand, within ECD_02051at 2104.632 kb on - strand, within ECD_02051at 2104.656 kb on + strand, within ECD_02051at 2104.684 kb on + strand, within ECD_02051at 2104.812 kb on - strand, within ECD_02051

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas26
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2,102,011 + ECD_02049 0.64 +0.6
2,102,055 + ECD_02049 0.66 +0.4
2,102,127 + ECD_02049 0.69 +0.2
2,102,178 + ECD_02049 0.71 +0.2
2,102,310 + ECD_02049 0.77 -0.8
2,102,310 + ECD_02049 0.77 -1.3
2,102,427 + ECD_02049 0.82 +0.3
2,102,428 - ECD_02049 0.82 -0.1
2,102,589 + ECD_02049 0.89 -0.6
2,102,634 + +0.8
2,103,159 - ECD_02050 0.29 -0.1
2,103,339 - ECD_02050 0.45 -1.8
2,103,973 - -1.2
2,103,987 + +0.7
2,103,987 + -0.7
2,104,190 - ECD_02051 0.11 +0.3
2,104,495 - ECD_02051 0.27 -0.4
2,104,551 + ECD_02051 0.29 +0.3
2,104,552 - ECD_02051 0.29 +0.9
2,104,631 + ECD_02051 0.33 -0.3
2,104,632 - ECD_02051 0.33 +0.5
2,104,656 + ECD_02051 0.35 +0.1
2,104,684 + ECD_02051 0.36 -0.4
2,104,812 - ECD_02051 0.42 -0.3

Or see this region's nucleotide sequence