Strain Fitness in Escherichia coli BL21 around ECD_00979

Experiment: Bas26

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_00977 and ECD_00978 overlap by 4 nucleotidesECD_00978 and ECD_00979 overlap by 4 nucleotidesECD_00979 and ECD_00980 overlap by 4 nucleotidesECD_00980 and ECD_00981 are separated by 133 nucleotides ECD_00977: ECD_00977 - hydrogenase 1, b-type cytochrome subunit, at 1,040,155 to 1,040,862 _00977 ECD_00978: ECD_00978 - hydrogenase 1 maturation protease, at 1,040,859 to 1,041,446 _00978 ECD_00979: ECD_00979 - putative HyaA chaperone, at 1,041,443 to 1,041,841 _00979 ECD_00980: ECD_00980 - hydrogenase-1 protein nickel incorporation factor, at 1,041,838 to 1,042,695 _00980 ECD_00981: ECD_00981 - cytochrome bd-II oxidase, subunit I, at 1,042,829 to 1,044,373 _00981 Position (kb) 1041 1042Strain fitness (log2 ratio) -2 -1 0 1at 1040.488 kb on + strand, within ECD_00977at 1040.522 kb on + strand, within ECD_00977at 1040.752 kb on + strand, within ECD_00977at 1040.844 kb on + strandat 1040.971 kb on - strand, within ECD_00978at 1040.993 kb on + strand, within ECD_00978at 1040.993 kb on + strand, within ECD_00978at 1041.093 kb on + strand, within ECD_00978at 1041.562 kb on - strand, within ECD_00979at 1041.644 kb on + strand, within ECD_00979at 1041.646 kb on + strand, within ECD_00979at 1041.646 kb on + strand, within ECD_00979at 1041.646 kb on + strand, within ECD_00979at 1041.647 kb on - strand, within ECD_00979at 1041.647 kb on - strand, within ECD_00979at 1041.647 kb on - strand, within ECD_00979at 1041.770 kb on - strand, within ECD_00979at 1042.098 kb on + strand, within ECD_00980at 1042.341 kb on - strand, within ECD_00980at 1042.370 kb on + strand, within ECD_00980at 1042.370 kb on + strand, within ECD_00980at 1042.370 kb on + strand, within ECD_00980at 1042.370 kb on + strand, within ECD_00980at 1042.371 kb on - strand, within ECD_00980at 1042.482 kb on + strand, within ECD_00980at 1042.504 kb on + strand, within ECD_00980at 1042.504 kb on + strand, within ECD_00980at 1042.504 kb on + strand, within ECD_00980at 1042.504 kb on + strand, within ECD_00980at 1042.541 kb on + strand, within ECD_00980at 1042.542 kb on - strand, within ECD_00980at 1042.542 kb on - strand, within ECD_00980at 1042.560 kb on - strand, within ECD_00980at 1042.661 kb on + strandat 1042.661 kb on + strandat 1042.662 kb on - strandat 1042.704 kb on + strandat 1042.746 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas26
remove
1,040,488 + ECD_00977 0.47 -1.6
1,040,522 + ECD_00977 0.52 -0.4
1,040,752 + ECD_00977 0.84 -0.3
1,040,844 + -0.1
1,040,971 - ECD_00978 0.19 +0.7
1,040,993 + ECD_00978 0.23 -0.3
1,040,993 + ECD_00978 0.23 -0.1
1,041,093 + ECD_00978 0.40 -0.7
1,041,562 - ECD_00979 0.30 +0.9
1,041,644 + ECD_00979 0.50 -0.2
1,041,646 + ECD_00979 0.51 -0.2
1,041,646 + ECD_00979 0.51 -0.3
1,041,646 + ECD_00979 0.51 +0.0
1,041,647 - ECD_00979 0.51 -0.6
1,041,647 - ECD_00979 0.51 -0.3
1,041,647 - ECD_00979 0.51 -0.4
1,041,770 - ECD_00979 0.82 +0.2
1,042,098 + ECD_00980 0.30 +0.1
1,042,341 - ECD_00980 0.59 +0.3
1,042,370 + ECD_00980 0.62 -1.0
1,042,370 + ECD_00980 0.62 +1.3
1,042,370 + ECD_00980 0.62 +0.7
1,042,370 + ECD_00980 0.62 +0.4
1,042,371 - ECD_00980 0.62 +1.5
1,042,482 + ECD_00980 0.75 +0.1
1,042,504 + ECD_00980 0.78 +1.2
1,042,504 + ECD_00980 0.78 +0.3
1,042,504 + ECD_00980 0.78 +0.5
1,042,504 + ECD_00980 0.78 +0.4
1,042,541 + ECD_00980 0.82 -2.2
1,042,542 - ECD_00980 0.82 -0.5
1,042,542 - ECD_00980 0.82 -1.4
1,042,560 - ECD_00980 0.84 -0.4
1,042,661 + +1.1
1,042,661 + +0.3
1,042,662 - +0.5
1,042,704 + +1.1
1,042,746 - -0.5

Or see this region's nucleotide sequence