Experiment: Bas26
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00967 and ECD_00968 are separated by 95 nucleotides ECD_00968 and ECD_00969 are separated by 172 nucleotides ECD_00969 and ECD_00970 are separated by 44 nucleotides ECD_00970 and ECD_00971 are separated by 57 nucleotides
ECD_00967: ECD_00967 - methylglyoxal synthase, at 1,031,646 to 1,032,104
_00967
ECD_00968: ECD_00968 - UPF0319 family protein, at 1,032,200 to 1,032,862
_00968
ECD_00969: ECD_00969 - putative CoA-binding protein, at 1,033,035 to 1,033,448
_00969
ECD_00970: ECD_00970 - heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA-binding protein, at 1,033,493 to 1,033,810
_00970
ECD_00971: ECD_00971 - 23S rRNA m(5)C1962 methyltransferase, SAM-dependent, at 1,033,868 to 1,035,058
_00971
Position (kb)
1033
1034 Strain fitness (log2 ratio)
-1
0
1 at 1032.066 kb on - strand at 1032.082 kb on - strand at 1032.110 kb on - strand at 1032.117 kb on + strand at 1032.143 kb on - strand at 1032.143 kb on - strand at 1032.349 kb on + strand, within ECD_00968 at 1032.632 kb on - strand, within ECD_00968 at 1032.632 kb on - strand, within ECD_00968 at 1032.633 kb on + strand, within ECD_00968 at 1032.633 kb on + strand, within ECD_00968 at 1032.634 kb on - strand, within ECD_00968 at 1032.634 kb on - strand, within ECD_00968 at 1032.974 kb on + strand at 1033.137 kb on + strand, within ECD_00969 at 1033.304 kb on + strand, within ECD_00969 at 1033.495 kb on - strand at 1033.593 kb on - strand, within ECD_00970 at 1033.593 kb on - strand, within ECD_00970 at 1033.593 kb on - strand, within ECD_00970 at 1033.593 kb on - strand, within ECD_00970 at 1033.842 kb on - strand at 1033.842 kb on - strand at 1033.869 kb on + strand at 1033.900 kb on - strand at 1033.915 kb on - strand at 1034.104 kb on + strand, within ECD_00971 at 1034.105 kb on - strand, within ECD_00971 at 1034.105 kb on - strand, within ECD_00971 at 1034.203 kb on + strand, within ECD_00971 at 1034.203 kb on + strand, within ECD_00971 at 1034.204 kb on - strand, within ECD_00971 at 1034.204 kb on - strand, within ECD_00971 at 1034.370 kb on + strand, within ECD_00971
Per-strain Table
Position Strand Gene LocusTag Fraction Bas26 remove 1,032,066 - -1.3 1,032,082 - -0.1 1,032,110 - -0.4 1,032,117 + +0.8 1,032,143 - +0.1 1,032,143 - -0.3 1,032,349 + ECD_00968 0.22 +0.6 1,032,632 - ECD_00968 0.65 +0.6 1,032,632 - ECD_00968 0.65 +0.2 1,032,633 + ECD_00968 0.65 +0.2 1,032,633 + ECD_00968 0.65 +0.5 1,032,634 - ECD_00968 0.65 -0.4 1,032,634 - ECD_00968 0.65 -0.6 1,032,974 + +1.1 1,033,137 + ECD_00969 0.25 +0.5 1,033,304 + ECD_00969 0.65 +0.8 1,033,495 - -0.3 1,033,593 - ECD_00970 0.31 +0.7 1,033,593 - ECD_00970 0.31 +0.0 1,033,593 - ECD_00970 0.31 -0.7 1,033,593 - ECD_00970 0.31 +0.1 1,033,842 - +0.1 1,033,842 - -0.3 1,033,869 + +0.7 1,033,900 - -0.8 1,033,915 - -0.7 1,034,104 + ECD_00971 0.20 -0.6 1,034,105 - ECD_00971 0.20 -0.2 1,034,105 - ECD_00971 0.20 -0.9 1,034,203 + ECD_00971 0.28 +0.8 1,034,203 + ECD_00971 0.28 +0.5 1,034,204 - ECD_00971 0.28 -0.6 1,034,204 - ECD_00971 0.28 -0.4 1,034,370 + ECD_00971 0.42 +0.8
Or see this region's nucleotide sequence