Experiment: Bas26
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00537 and ECD_00538 are separated by 67 nucleotides ECD_00538 and ECD_00539 are separated by 107 nucleotides ECD_00539 and ECD_00540 are separated by 93 nucleotides
ECD_00537: ECD_00537 - phenylalanine transporter, at 560,641 to 562,017
_00537
ECD_00538: ECD_00538 - mechanosensitive channel protein, miniconductance, at 562,085 to 563,332
_00538
ECD_00539: ECD_00539 - dihydropteridine reductase, NAD(P)H-dependent, oxygen-insensitive, at 563,440 to 564,093
_00539
ECD_00540: ECD_00540 - DUF419 family protein, at 564,187 to 564,555
_00540
Position (kb) 562
563
564 Strain fitness (log2 ratio) -2
-1
0
1
2 at 561.107 kb on + strand, within ECD_00537 at 561.108 kb on - strand, within ECD_00537 at 561.108 kb on - strand, within ECD_00537 at 561.109 kb on + strand, within ECD_00537 at 561.163 kb on - strand, within ECD_00537 at 561.294 kb on + strand, within ECD_00537 at 561.294 kb on + strand, within ECD_00537 at 561.789 kb on + strand, within ECD_00537 at 561.855 kb on + strand, within ECD_00537 at 561.884 kb on - strand at 561.939 kb on + strand at 561.977 kb on + strand at 561.978 kb on - strand at 562.093 kb on + strand at 562.175 kb on + strand at 562.176 kb on - strand at 562.287 kb on - strand, within ECD_00538 at 562.301 kb on - strand, within ECD_00538 at 562.364 kb on - strand, within ECD_00538 at 562.400 kb on - strand, within ECD_00538 at 562.449 kb on - strand, within ECD_00538 at 562.733 kb on - strand, within ECD_00538 at 562.754 kb on - strand, within ECD_00538 at 562.754 kb on - strand, within ECD_00538 at 562.783 kb on + strand, within ECD_00538 at 562.784 kb on - strand, within ECD_00538 at 562.914 kb on - strand, within ECD_00538 at 562.970 kb on - strand, within ECD_00538 at 563.322 kb on - strand at 563.322 kb on - strand at 563.332 kb on + strand at 563.346 kb on + strand at 563.347 kb on - strand at 563.547 kb on - strand, within ECD_00539 at 563.716 kb on - strand, within ECD_00539 at 563.874 kb on + strand, within ECD_00539 at 563.874 kb on + strand, within ECD_00539 at 563.891 kb on + strand, within ECD_00539 at 563.892 kb on - strand, within ECD_00539 at 563.949 kb on + strand, within ECD_00539 at 563.988 kb on - strand, within ECD_00539 at 564.156 kb on - strand at 564.176 kb on - strand at 564.176 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas26 remove 561,107 + ECD_00537 0.34 -0.3 561,108 - ECD_00537 0.34 -0.1 561,108 - ECD_00537 0.34 -0.2 561,109 + ECD_00537 0.34 +0.3 561,163 - ECD_00537 0.38 +0.3 561,294 + ECD_00537 0.47 +0.0 561,294 + ECD_00537 0.47 +1.9 561,789 + ECD_00537 0.83 -0.4 561,855 + ECD_00537 0.88 +0.4 561,884 - +1.0 561,939 + +0.7 561,977 + -0.4 561,978 - +0.4 562,093 + +0.4 562,175 + +0.4 562,176 - -0.0 562,287 - ECD_00538 0.16 -0.1 562,301 - ECD_00538 0.17 +2.1 562,364 - ECD_00538 0.22 -0.9 562,400 - ECD_00538 0.25 -1.8 562,449 - ECD_00538 0.29 -0.6 562,733 - ECD_00538 0.52 +0.2 562,754 - ECD_00538 0.54 -1.3 562,754 - ECD_00538 0.54 -0.2 562,783 + ECD_00538 0.56 -2.1 562,784 - ECD_00538 0.56 -0.0 562,914 - ECD_00538 0.66 -0.4 562,970 - ECD_00538 0.71 +0.1 563,322 - +0.3 563,322 - -0.6 563,332 + +0.3 563,346 + +0.6 563,347 - +0.7 563,547 - ECD_00539 0.16 -0.1 563,716 - ECD_00539 0.42 +0.2 563,874 + ECD_00539 0.66 +0.5 563,874 + ECD_00539 0.66 +0.1 563,891 + ECD_00539 0.69 +0.7 563,892 - ECD_00539 0.69 +0.1 563,949 + ECD_00539 0.78 +0.4 563,988 - ECD_00539 0.84 -0.1 564,156 - -0.3 564,176 - -0.3 564,176 - +0.9
Or see this region's nucleotide sequence