Strain Fitness in Escherichia coli BL21 around ECD_03970

Experiment: Bas26

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03968 and ECD_03969 are separated by 110 nucleotidesECD_03969 and ECD_03970 overlap by 4 nucleotidesECD_03970 and ECD_03971 overlap by 8 nucleotides ECD_03968: ECD_03968 - ribophosphonate triphosphate synthase subunit; putative ABC transporter-related ATPase, at 4,224,402 to 4,225,082 _03968 ECD_03969: ECD_03969 - carbon-phosphorus lyase complex subunit, putative ATP transporter ATP-binding protein, at 4,225,193 to 4,225,951 _03969 ECD_03970: ECD_03970 - carbon-phosphorus lyase, SAM-dependent, at 4,225,948 to 4,226,793 _03970 ECD_03971: ECD_03971 - ribophosphonate triphosphate synthase complex putative catalytic subunit, at 4,226,786 to 4,227,850 _03971 Position (kb) 4225 4226 4227Strain fitness (log2 ratio) -1 0 1 2at 4225.071 kb on + strandat 4225.071 kb on + strandat 4225.072 kb on - strandat 4225.072 kb on - strandat 4225.076 kb on + strandat 4225.172 kb on + strandat 4225.229 kb on - strandat 4225.335 kb on - strand, within ECD_03969at 4225.447 kb on + strand, within ECD_03969at 4225.448 kb on - strand, within ECD_03969at 4225.504 kb on + strand, within ECD_03969at 4225.636 kb on + strand, within ECD_03969at 4225.744 kb on - strand, within ECD_03969at 4225.744 kb on - strand, within ECD_03969at 4225.761 kb on + strand, within ECD_03969at 4225.937 kb on + strandat 4225.938 kb on - strandat 4226.045 kb on + strand, within ECD_03970at 4226.045 kb on + strand, within ECD_03970at 4226.045 kb on + strand, within ECD_03970at 4226.045 kb on + strand, within ECD_03970at 4226.045 kb on + strand, within ECD_03970at 4226.045 kb on + strand, within ECD_03970at 4226.046 kb on - strand, within ECD_03970at 4226.046 kb on - strand, within ECD_03970at 4226.046 kb on - strand, within ECD_03970at 4226.153 kb on + strand, within ECD_03970at 4226.154 kb on - strand, within ECD_03970at 4226.154 kb on - strand, within ECD_03970at 4226.154 kb on - strand, within ECD_03970at 4226.154 kb on - strand, within ECD_03970at 4226.248 kb on + strand, within ECD_03970at 4226.248 kb on + strand, within ECD_03970at 4226.249 kb on - strand, within ECD_03970at 4226.252 kb on + strand, within ECD_03970at 4226.252 kb on + strand, within ECD_03970at 4226.253 kb on - strand, within ECD_03970at 4226.282 kb on + strand, within ECD_03970at 4226.282 kb on + strand, within ECD_03970at 4226.282 kb on + strand, within ECD_03970at 4226.282 kb on + strand, within ECD_03970at 4226.282 kb on + strand, within ECD_03970at 4226.283 kb on - strand, within ECD_03970at 4226.283 kb on - strand, within ECD_03970at 4226.283 kb on - strand, within ECD_03970at 4226.283 kb on - strand, within ECD_03970at 4226.283 kb on - strand, within ECD_03970at 4226.283 kb on - strand, within ECD_03970at 4226.321 kb on + strand, within ECD_03970at 4226.345 kb on + strand, within ECD_03970at 4226.597 kb on - strand, within ECD_03970at 4226.597 kb on - strand, within ECD_03970at 4226.658 kb on - strand, within ECD_03970at 4226.719 kb on + strandat 4226.719 kb on + strandat 4226.720 kb on - strandat 4226.720 kb on - strandat 4226.775 kb on - strandat 4226.851 kb on - strandat 4226.851 kb on - strandat 4226.851 kb on - strandat 4226.851 kb on - strandat 4227.023 kb on + strand, within ECD_03971at 4227.165 kb on + strand, within ECD_03971at 4227.166 kb on - strand, within ECD_03971at 4227.166 kb on - strand, within ECD_03971at 4227.244 kb on - strand, within ECD_03971at 4227.480 kb on + strand, within ECD_03971at 4227.481 kb on - strand, within ECD_03971at 4227.487 kb on - strand, within ECD_03971at 4227.523 kb on + strand, within ECD_03971at 4227.525 kb on + strand, within ECD_03971at 4227.526 kb on - strand, within ECD_03971at 4227.538 kb on + strand, within ECD_03971at 4227.539 kb on - strand, within ECD_03971

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas26
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4,225,071 + -0.3
4,225,071 + -0.2
4,225,072 - -0.6
4,225,072 - -1.0
4,225,076 + -0.3
4,225,172 + -0.2
4,225,229 - -0.3
4,225,335 - ECD_03969 0.19 -0.3
4,225,447 + ECD_03969 0.33 +0.7
4,225,448 - ECD_03969 0.34 -0.3
4,225,504 + ECD_03969 0.41 +0.3
4,225,636 + ECD_03969 0.58 +0.1
4,225,744 - ECD_03969 0.73 -0.2
4,225,744 - ECD_03969 0.73 +0.2
4,225,761 + ECD_03969 0.75 +1.0
4,225,937 + -0.1
4,225,938 - +0.2
4,226,045 + ECD_03970 0.11 -0.6
4,226,045 + ECD_03970 0.11 +1.0
4,226,045 + ECD_03970 0.11 +1.7
4,226,045 + ECD_03970 0.11 +0.0
4,226,045 + ECD_03970 0.11 +0.8
4,226,045 + ECD_03970 0.11 -0.1
4,226,046 - ECD_03970 0.12 -0.1
4,226,046 - ECD_03970 0.12 +0.8
4,226,046 - ECD_03970 0.12 -0.2
4,226,153 + ECD_03970 0.24 +0.8
4,226,154 - ECD_03970 0.24 -0.0
4,226,154 - ECD_03970 0.24 +0.6
4,226,154 - ECD_03970 0.24 +1.0
4,226,154 - ECD_03970 0.24 -0.1
4,226,248 + ECD_03970 0.35 +0.1
4,226,248 + ECD_03970 0.35 -0.4
4,226,249 - ECD_03970 0.36 -0.3
4,226,252 + ECD_03970 0.36 +0.6
4,226,252 + ECD_03970 0.36 +0.2
4,226,253 - ECD_03970 0.36 +0.7
4,226,282 + ECD_03970 0.39 -0.6
4,226,282 + ECD_03970 0.39 -0.2
4,226,282 + ECD_03970 0.39 +0.6
4,226,282 + ECD_03970 0.39 -0.1
4,226,282 + ECD_03970 0.39 -0.5
4,226,283 - ECD_03970 0.40 +0.3
4,226,283 - ECD_03970 0.40 -0.2
4,226,283 - ECD_03970 0.40 +0.7
4,226,283 - ECD_03970 0.40 +0.9
4,226,283 - ECD_03970 0.40 +0.8
4,226,283 - ECD_03970 0.40 +0.4
4,226,321 + ECD_03970 0.44 +0.1
4,226,345 + ECD_03970 0.47 +0.2
4,226,597 - ECD_03970 0.77 +1.9
4,226,597 - ECD_03970 0.77 -0.0
4,226,658 - ECD_03970 0.84 +0.4
4,226,719 + -1.5
4,226,719 + -0.0
4,226,720 - +1.0
4,226,720 - +0.2
4,226,775 - +0.3
4,226,851 - +0.3
4,226,851 - +0.1
4,226,851 - +0.4
4,226,851 - +0.5
4,227,023 + ECD_03971 0.22 -0.1
4,227,165 + ECD_03971 0.36 -1.4
4,227,166 - ECD_03971 0.36 -0.3
4,227,166 - ECD_03971 0.36 -0.5
4,227,244 - ECD_03971 0.43 -0.1
4,227,480 + ECD_03971 0.65 +0.0
4,227,481 - ECD_03971 0.65 +0.5
4,227,487 - ECD_03971 0.66 -0.4
4,227,523 + ECD_03971 0.69 -0.4
4,227,525 + ECD_03971 0.69 +1.4
4,227,526 - ECD_03971 0.69 -1.0
4,227,538 + ECD_03971 0.71 +0.3
4,227,539 - ECD_03971 0.71 -0.1

Or see this region's nucleotide sequence