Experiment: Bas26
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03968 and ECD_03969 are separated by 110 nucleotides ECD_03969 and ECD_03970 overlap by 4 nucleotides ECD_03970 and ECD_03971 overlap by 8 nucleotides
ECD_03968: ECD_03968 - ribophosphonate triphosphate synthase subunit; putative ABC transporter-related ATPase, at 4,224,402 to 4,225,082
_03968
ECD_03969: ECD_03969 - carbon-phosphorus lyase complex subunit, putative ATP transporter ATP-binding protein, at 4,225,193 to 4,225,951
_03969
ECD_03970: ECD_03970 - carbon-phosphorus lyase, SAM-dependent, at 4,225,948 to 4,226,793
_03970
ECD_03971: ECD_03971 - ribophosphonate triphosphate synthase complex putative catalytic subunit, at 4,226,786 to 4,227,850
_03971
Position (kb)
4225
4226
4227 Strain fitness (log2 ratio)
-1
0
1
2 at 4225.071 kb on + strand at 4225.071 kb on + strand at 4225.072 kb on - strand at 4225.072 kb on - strand at 4225.076 kb on + strand at 4225.172 kb on + strand at 4225.229 kb on - strand at 4225.335 kb on - strand, within ECD_03969 at 4225.447 kb on + strand, within ECD_03969 at 4225.448 kb on - strand, within ECD_03969 at 4225.504 kb on + strand, within ECD_03969 at 4225.636 kb on + strand, within ECD_03969 at 4225.744 kb on - strand, within ECD_03969 at 4225.744 kb on - strand, within ECD_03969 at 4225.761 kb on + strand, within ECD_03969 at 4225.937 kb on + strand at 4225.938 kb on - strand at 4226.045 kb on + strand, within ECD_03970 at 4226.045 kb on + strand, within ECD_03970 at 4226.045 kb on + strand, within ECD_03970 at 4226.045 kb on + strand, within ECD_03970 at 4226.045 kb on + strand, within ECD_03970 at 4226.045 kb on + strand, within ECD_03970 at 4226.046 kb on - strand, within ECD_03970 at 4226.046 kb on - strand, within ECD_03970 at 4226.046 kb on - strand, within ECD_03970 at 4226.153 kb on + strand, within ECD_03970 at 4226.154 kb on - strand, within ECD_03970 at 4226.154 kb on - strand, within ECD_03970 at 4226.154 kb on - strand, within ECD_03970 at 4226.154 kb on - strand, within ECD_03970 at 4226.248 kb on + strand, within ECD_03970 at 4226.248 kb on + strand, within ECD_03970 at 4226.249 kb on - strand, within ECD_03970 at 4226.252 kb on + strand, within ECD_03970 at 4226.252 kb on + strand, within ECD_03970 at 4226.253 kb on - strand, within ECD_03970 at 4226.282 kb on + strand, within ECD_03970 at 4226.282 kb on + strand, within ECD_03970 at 4226.282 kb on + strand, within ECD_03970 at 4226.282 kb on + strand, within ECD_03970 at 4226.282 kb on + strand, within ECD_03970 at 4226.283 kb on - strand, within ECD_03970 at 4226.283 kb on - strand, within ECD_03970 at 4226.283 kb on - strand, within ECD_03970 at 4226.283 kb on - strand, within ECD_03970 at 4226.283 kb on - strand, within ECD_03970 at 4226.283 kb on - strand, within ECD_03970 at 4226.321 kb on + strand, within ECD_03970 at 4226.345 kb on + strand, within ECD_03970 at 4226.597 kb on - strand, within ECD_03970 at 4226.597 kb on - strand, within ECD_03970 at 4226.658 kb on - strand, within ECD_03970 at 4226.719 kb on + strand at 4226.719 kb on + strand at 4226.720 kb on - strand at 4226.720 kb on - strand at 4226.775 kb on - strand at 4226.851 kb on - strand at 4226.851 kb on - strand at 4226.851 kb on - strand at 4226.851 kb on - strand at 4227.023 kb on + strand, within ECD_03971 at 4227.165 kb on + strand, within ECD_03971 at 4227.166 kb on - strand, within ECD_03971 at 4227.166 kb on - strand, within ECD_03971 at 4227.244 kb on - strand, within ECD_03971 at 4227.480 kb on + strand, within ECD_03971 at 4227.481 kb on - strand, within ECD_03971 at 4227.487 kb on - strand, within ECD_03971 at 4227.523 kb on + strand, within ECD_03971 at 4227.525 kb on + strand, within ECD_03971 at 4227.526 kb on - strand, within ECD_03971 at 4227.538 kb on + strand, within ECD_03971 at 4227.539 kb on - strand, within ECD_03971
Per-strain Table
Position Strand Gene LocusTag Fraction Bas26 remove 4,225,071 + -0.3 4,225,071 + -0.2 4,225,072 - -0.6 4,225,072 - -1.0 4,225,076 + -0.3 4,225,172 + -0.2 4,225,229 - -0.3 4,225,335 - ECD_03969 0.19 -0.3 4,225,447 + ECD_03969 0.33 +0.7 4,225,448 - ECD_03969 0.34 -0.3 4,225,504 + ECD_03969 0.41 +0.3 4,225,636 + ECD_03969 0.58 +0.1 4,225,744 - ECD_03969 0.73 -0.2 4,225,744 - ECD_03969 0.73 +0.2 4,225,761 + ECD_03969 0.75 +1.0 4,225,937 + -0.1 4,225,938 - +0.2 4,226,045 + ECD_03970 0.11 -0.6 4,226,045 + ECD_03970 0.11 +1.0 4,226,045 + ECD_03970 0.11 +1.7 4,226,045 + ECD_03970 0.11 +0.0 4,226,045 + ECD_03970 0.11 +0.8 4,226,045 + ECD_03970 0.11 -0.1 4,226,046 - ECD_03970 0.12 -0.1 4,226,046 - ECD_03970 0.12 +0.8 4,226,046 - ECD_03970 0.12 -0.2 4,226,153 + ECD_03970 0.24 +0.8 4,226,154 - ECD_03970 0.24 -0.0 4,226,154 - ECD_03970 0.24 +0.6 4,226,154 - ECD_03970 0.24 +1.0 4,226,154 - ECD_03970 0.24 -0.1 4,226,248 + ECD_03970 0.35 +0.1 4,226,248 + ECD_03970 0.35 -0.4 4,226,249 - ECD_03970 0.36 -0.3 4,226,252 + ECD_03970 0.36 +0.6 4,226,252 + ECD_03970 0.36 +0.2 4,226,253 - ECD_03970 0.36 +0.7 4,226,282 + ECD_03970 0.39 -0.6 4,226,282 + ECD_03970 0.39 -0.2 4,226,282 + ECD_03970 0.39 +0.6 4,226,282 + ECD_03970 0.39 -0.1 4,226,282 + ECD_03970 0.39 -0.5 4,226,283 - ECD_03970 0.40 +0.3 4,226,283 - ECD_03970 0.40 -0.2 4,226,283 - ECD_03970 0.40 +0.7 4,226,283 - ECD_03970 0.40 +0.9 4,226,283 - ECD_03970 0.40 +0.8 4,226,283 - ECD_03970 0.40 +0.4 4,226,321 + ECD_03970 0.44 +0.1 4,226,345 + ECD_03970 0.47 +0.2 4,226,597 - ECD_03970 0.77 +1.9 4,226,597 - ECD_03970 0.77 -0.0 4,226,658 - ECD_03970 0.84 +0.4 4,226,719 + -1.5 4,226,719 + -0.0 4,226,720 - +1.0 4,226,720 - +0.2 4,226,775 - +0.3 4,226,851 - +0.3 4,226,851 - +0.1 4,226,851 - +0.4 4,226,851 - +0.5 4,227,023 + ECD_03971 0.22 -0.1 4,227,165 + ECD_03971 0.36 -1.4 4,227,166 - ECD_03971 0.36 -0.3 4,227,166 - ECD_03971 0.36 -0.5 4,227,244 - ECD_03971 0.43 -0.1 4,227,480 + ECD_03971 0.65 +0.0 4,227,481 - ECD_03971 0.65 +0.5 4,227,487 - ECD_03971 0.66 -0.4 4,227,523 + ECD_03971 0.69 -0.4 4,227,525 + ECD_03971 0.69 +1.4 4,227,526 - ECD_03971 0.69 -1.0 4,227,538 + ECD_03971 0.71 +0.3 4,227,539 - ECD_03971 0.71 -0.1
Or see this region's nucleotide sequence