Strain Fitness in Escherichia coli BL21 around ECD_03246

Experiment: Bas26

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03243 and ECD_03244 overlap by 89 nucleotidesECD_03244 and ECD_03245 overlap by 11 nucleotidesECD_03245 and ECD_03246 overlap by 17 nucleotidesECD_03246 and ECD_03247 overlap by 1 nucleotidesECD_03247 and ECD_03248 are separated by 119 nucleotides ECD_03243: ECD_03243 - DNA catabolic putative fimbrial transporter, at 3,379,843 to 3,381,081 _03243 ECD_03244: ECD_03244 - DNA catabolic protein, at 3,380,993 to 3,381,397 _03244 ECD_03245: ECD_03245 - DNA catabolic protein, at 3,381,387 to 3,381,827 _03245 ECD_03246: ECD_03246 - DNA catabolic putative fimbrial assembly protein, at 3,381,811 to 3,382,350 _03246 ECD_03247: ECD_03247 - DNA catabolic putative pilus assembly protein, at 3,382,350 to 3,383,129 _03247 ECD_03248: ECD_03248 - penicillin-binding protein 1a, murein transglycosylase and transpeptidase, at 3,383,249 to 3,385,801 _03248 Position (kb) 3381 3382 3383Strain fitness (log2 ratio) -2 -1 0 1at 3380.869 kb on + strand, within ECD_03243at 3380.896 kb on + strand, within ECD_03243at 3380.902 kb on + strand, within ECD_03243at 3380.902 kb on + strand, within ECD_03243at 3380.903 kb on - strand, within ECD_03243at 3380.903 kb on - strand, within ECD_03243at 3381.034 kb on + strandat 3381.058 kb on + strandat 3381.059 kb on - strandat 3381.059 kb on - strandat 3381.085 kb on + strand, within ECD_03244at 3381.147 kb on - strand, within ECD_03244at 3381.168 kb on - strand, within ECD_03244at 3381.168 kb on - strand, within ECD_03244at 3381.237 kb on - strand, within ECD_03244at 3381.311 kb on + strand, within ECD_03244at 3381.311 kb on + strand, within ECD_03244at 3381.312 kb on - strand, within ECD_03244at 3381.329 kb on - strand, within ECD_03244at 3381.344 kb on - strand, within ECD_03244at 3381.367 kb on + strandat 3381.367 kb on + strandat 3381.368 kb on - strandat 3381.414 kb on + strandat 3381.414 kb on + strandat 3381.583 kb on - strand, within ECD_03245at 3381.653 kb on - strand, within ECD_03245at 3381.696 kb on + strand, within ECD_03245at 3381.729 kb on + strand, within ECD_03245at 3381.743 kb on + strand, within ECD_03245at 3381.747 kb on + strand, within ECD_03245at 3381.747 kb on + strand, within ECD_03245at 3381.844 kb on + strandat 3381.940 kb on + strand, within ECD_03246at 3381.949 kb on + strand, within ECD_03246at 3382.117 kb on + strand, within ECD_03246at 3382.156 kb on + strand, within ECD_03246at 3382.156 kb on + strand, within ECD_03246at 3382.156 kb on + strand, within ECD_03246at 3382.157 kb on - strand, within ECD_03246at 3382.202 kb on - strand, within ECD_03246at 3382.202 kb on - strand, within ECD_03246at 3382.234 kb on + strand, within ECD_03246at 3382.235 kb on - strand, within ECD_03246at 3382.237 kb on + strand, within ECD_03246at 3382.355 kb on - strandat 3382.467 kb on + strand, within ECD_03247at 3382.467 kb on + strand, within ECD_03247at 3382.618 kb on - strand, within ECD_03247at 3382.697 kb on + strand, within ECD_03247at 3382.698 kb on - strand, within ECD_03247at 3382.739 kb on + strand, within ECD_03247at 3382.740 kb on - strand, within ECD_03247at 3382.741 kb on + strand, within ECD_03247at 3382.741 kb on + strand, within ECD_03247at 3382.742 kb on - strand, within ECD_03247at 3382.742 kb on - strand, within ECD_03247at 3382.769 kb on - strand, within ECD_03247at 3382.884 kb on + strand, within ECD_03247at 3382.913 kb on + strand, within ECD_03247at 3382.913 kb on + strand, within ECD_03247at 3382.913 kb on + strand, within ECD_03247at 3382.913 kb on + strand, within ECD_03247at 3382.914 kb on - strand, within ECD_03247at 3382.914 kb on - strand, within ECD_03247at 3382.914 kb on - strand, within ECD_03247at 3382.950 kb on + strand, within ECD_03247at 3382.950 kb on + strand, within ECD_03247at 3382.951 kb on - strand, within ECD_03247at 3382.961 kb on + strand, within ECD_03247at 3383.001 kb on - strand, within ECD_03247at 3383.094 kb on + strandat 3383.094 kb on + strandat 3383.094 kb on + strandat 3383.094 kb on + strandat 3383.167 kb on - strandat 3383.167 kb on - strandat 3383.168 kb on + strandat 3383.169 kb on - strandat 3383.191 kb on + strandat 3383.192 kb on - strandat 3383.192 kb on - strandat 3383.192 kb on - strandat 3383.192 kb on - strandat 3383.193 kb on + strandat 3383.194 kb on - strandat 3383.194 kb on - strandat 3383.194 kb on - strandat 3383.194 kb on - strandat 3383.194 kb on - strandat 3383.213 kb on + strandat 3383.232 kb on + strandat 3383.259 kb on + strandat 3383.265 kb on - strandat 3383.315 kb on + strandat 3383.322 kb on + strandat 3383.322 kb on + strandat 3383.322 kb on + strandat 3383.323 kb on - strandat 3383.323 kb on - strandat 3383.323 kb on - strandat 3383.324 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas26
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3,380,869 + ECD_03243 0.83 -0.7
3,380,896 + ECD_03243 0.85 +0.1
3,380,902 + ECD_03243 0.85 -0.1
3,380,902 + ECD_03243 0.85 +0.0
3,380,903 - ECD_03243 0.86 +1.6
3,380,903 - ECD_03243 0.86 +0.2
3,381,034 + -2.0
3,381,058 + -0.6
3,381,059 - -0.1
3,381,059 - -0.5
3,381,085 + ECD_03244 0.23 -0.6
3,381,147 - ECD_03244 0.38 +1.0
3,381,168 - ECD_03244 0.43 -0.6
3,381,168 - ECD_03244 0.43 -0.0
3,381,237 - ECD_03244 0.60 -0.3
3,381,311 + ECD_03244 0.79 -0.6
3,381,311 + ECD_03244 0.79 -0.6
3,381,312 - ECD_03244 0.79 +0.6
3,381,329 - ECD_03244 0.83 -0.7
3,381,344 - ECD_03244 0.87 -0.8
3,381,367 + +0.3
3,381,367 + +0.3
3,381,368 - +0.7
3,381,414 + -1.0
3,381,414 + +0.4
3,381,583 - ECD_03245 0.44 -0.3
3,381,653 - ECD_03245 0.60 +0.2
3,381,696 + ECD_03245 0.70 +0.5
3,381,729 + ECD_03245 0.78 +0.3
3,381,743 + ECD_03245 0.81 -0.2
3,381,747 + ECD_03245 0.82 +0.1
3,381,747 + ECD_03245 0.82 -0.5
3,381,844 + -1.4
3,381,940 + ECD_03246 0.24 +0.0
3,381,949 + ECD_03246 0.26 -1.2
3,382,117 + ECD_03246 0.57 -0.4
3,382,156 + ECD_03246 0.64 +0.7
3,382,156 + ECD_03246 0.64 +0.5
3,382,156 + ECD_03246 0.64 -0.1
3,382,157 - ECD_03246 0.64 +1.2
3,382,202 - ECD_03246 0.72 +1.1
3,382,202 - ECD_03246 0.72 -0.5
3,382,234 + ECD_03246 0.78 +1.0
3,382,235 - ECD_03246 0.79 -0.5
3,382,237 + ECD_03246 0.79 +0.2
3,382,355 - +0.1
3,382,467 + ECD_03247 0.15 +1.2
3,382,467 + ECD_03247 0.15 -0.2
3,382,618 - ECD_03247 0.34 +0.1
3,382,697 + ECD_03247 0.44 +0.4
3,382,698 - ECD_03247 0.45 -0.3
3,382,739 + ECD_03247 0.50 +0.2
3,382,740 - ECD_03247 0.50 -0.1
3,382,741 + ECD_03247 0.50 +0.2
3,382,741 + ECD_03247 0.50 +1.2
3,382,742 - ECD_03247 0.50 -1.0
3,382,742 - ECD_03247 0.50 -0.3
3,382,769 - ECD_03247 0.54 +0.1
3,382,884 + ECD_03247 0.68 +0.7
3,382,913 + ECD_03247 0.72 -0.8
3,382,913 + ECD_03247 0.72 -0.1
3,382,913 + ECD_03247 0.72 +0.2
3,382,913 + ECD_03247 0.72 -0.1
3,382,914 - ECD_03247 0.72 -0.7
3,382,914 - ECD_03247 0.72 +0.3
3,382,914 - ECD_03247 0.72 -0.6
3,382,950 + ECD_03247 0.77 -0.7
3,382,950 + ECD_03247 0.77 +0.6
3,382,951 - ECD_03247 0.77 -0.8
3,382,961 + ECD_03247 0.78 -0.4
3,383,001 - ECD_03247 0.83 +0.4
3,383,094 + +0.2
3,383,094 + +1.2
3,383,094 + -0.1
3,383,094 + -0.2
3,383,167 - +0.3
3,383,167 - +0.1
3,383,168 + +0.2
3,383,169 - -0.8
3,383,191 + +0.2
3,383,192 - -0.8
3,383,192 - +0.1
3,383,192 - +0.8
3,383,192 - -0.3
3,383,193 + -0.1
3,383,194 - +0.1
3,383,194 - +0.5
3,383,194 - +0.6
3,383,194 - -0.0
3,383,194 - +0.4
3,383,213 + +0.4
3,383,232 + +0.2
3,383,259 + -0.5
3,383,265 - -0.4
3,383,315 + -0.7
3,383,322 + -0.3
3,383,322 + -0.5
3,383,322 + +0.4
3,383,323 - -0.1
3,383,323 - -0.5
3,383,323 - +0.4
3,383,324 + -0.1

Or see this region's nucleotide sequence