Experiment: Bas26
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03103 and ECD_03104 are separated by 127 nucleotides ECD_03104 and ECD_03105 are separated by 429 nucleotides
ECD_03103: ECD_03103 - transcriptional regulator for aaeXAB operon, at 3,250,682 to 3,251,611
_03103
ECD_03104: ECD_03104 - putative peptidase, at 3,251,739 to 3,253,184
_03104
ECD_03105: ECD_03105 - DUF3971-AsmA2 domains protein, at 3,253,614 to 3,257,414
_03105
Position (kb)
3251
3252
3253
3254 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3250.758 kb on + strand at 3250.759 kb on - strand at 3250.759 kb on - strand at 3250.759 kb on - strand at 3250.818 kb on + strand, within ECD_03103 at 3250.827 kb on + strand, within ECD_03103 at 3250.875 kb on - strand, within ECD_03103 at 3250.931 kb on + strand, within ECD_03103 at 3250.931 kb on + strand, within ECD_03103 at 3250.931 kb on + strand, within ECD_03103 at 3250.932 kb on - strand, within ECD_03103 at 3250.984 kb on + strand, within ECD_03103 at 3251.033 kb on + strand, within ECD_03103 at 3251.211 kb on + strand, within ECD_03103 at 3251.255 kb on + strand, within ECD_03103 at 3251.256 kb on - strand, within ECD_03103 at 3251.393 kb on + strand, within ECD_03103 at 3251.393 kb on + strand, within ECD_03103 at 3251.394 kb on - strand, within ECD_03103 at 3251.490 kb on + strand, within ECD_03103 at 3251.491 kb on - strand, within ECD_03103 at 3251.491 kb on - strand, within ECD_03103 at 3251.491 kb on - strand, within ECD_03103 at 3251.491 kb on - strand, within ECD_03103 at 3251.491 kb on - strand, within ECD_03103 at 3251.493 kb on - strand, within ECD_03103 at 3251.493 kb on - strand, within ECD_03103 at 3251.507 kb on - strand, within ECD_03103 at 3251.523 kb on + strand at 3251.523 kb on + strand at 3251.523 kb on + strand at 3251.524 kb on - strand at 3251.569 kb on + strand at 3251.609 kb on + strand at 3251.609 kb on + strand at 3251.609 kb on + strand at 3251.610 kb on - strand at 3251.616 kb on + strand at 3251.621 kb on + strand at 3251.621 kb on + strand at 3251.622 kb on - strand at 3251.715 kb on - strand at 3251.954 kb on - strand, within ECD_03104 at 3252.025 kb on + strand, within ECD_03104 at 3252.025 kb on + strand, within ECD_03104 at 3252.025 kb on + strand, within ECD_03104 at 3252.025 kb on + strand, within ECD_03104 at 3252.025 kb on + strand, within ECD_03104 at 3252.026 kb on - strand, within ECD_03104 at 3252.026 kb on - strand, within ECD_03104 at 3252.026 kb on - strand, within ECD_03104 at 3252.026 kb on - strand, within ECD_03104 at 3252.026 kb on - strand, within ECD_03104 at 3252.026 kb on - strand, within ECD_03104 at 3252.029 kb on + strand, within ECD_03104 at 3252.030 kb on - strand, within ECD_03104 at 3252.034 kb on + strand, within ECD_03104 at 3252.035 kb on - strand, within ECD_03104 at 3252.084 kb on - strand, within ECD_03104 at 3252.085 kb on + strand, within ECD_03104 at 3252.086 kb on - strand, within ECD_03104 at 3252.086 kb on - strand, within ECD_03104 at 3252.086 kb on - strand, within ECD_03104 at 3252.086 kb on - strand, within ECD_03104 at 3252.086 kb on - strand, within ECD_03104 at 3252.121 kb on + strand, within ECD_03104 at 3252.122 kb on - strand, within ECD_03104 at 3252.191 kb on - strand, within ECD_03104 at 3252.240 kb on - strand, within ECD_03104 at 3252.303 kb on - strand, within ECD_03104 at 3252.303 kb on - strand, within ECD_03104 at 3252.303 kb on - strand, within ECD_03104 at 3252.341 kb on + strand, within ECD_03104 at 3252.346 kb on - strand, within ECD_03104 at 3252.433 kb on - strand, within ECD_03104 at 3252.556 kb on + strand, within ECD_03104 at 3252.697 kb on + strand, within ECD_03104 at 3252.697 kb on + strand, within ECD_03104 at 3252.729 kb on + strand, within ECD_03104 at 3252.759 kb on - strand, within ECD_03104 at 3252.817 kb on - strand, within ECD_03104 at 3252.825 kb on - strand, within ECD_03104 at 3252.827 kb on - strand, within ECD_03104 at 3252.827 kb on - strand, within ECD_03104 at 3252.827 kb on - strand, within ECD_03104 at 3252.827 kb on - strand, within ECD_03104 at 3252.827 kb on - strand, within ECD_03104 at 3252.827 kb on - strand, within ECD_03104 at 3252.827 kb on - strand, within ECD_03104 at 3252.827 kb on - strand, within ECD_03104 at 3252.878 kb on + strand, within ECD_03104 at 3252.879 kb on - strand, within ECD_03104 at 3253.006 kb on + strand, within ECD_03104 at 3253.006 kb on + strand, within ECD_03104 at 3253.007 kb on - strand, within ECD_03104 at 3253.007 kb on - strand, within ECD_03104 at 3253.020 kb on - strand, within ECD_03104 at 3253.054 kb on + strand at 3253.055 kb on - strand at 3253.167 kb on + strand at 3253.201 kb on + strand at 3253.202 kb on - strand at 3253.205 kb on + strand at 3253.213 kb on + strand at 3253.214 kb on - strand at 3253.214 kb on - strand at 3253.269 kb on + strand at 3253.355 kb on + strand at 3253.361 kb on + strand at 3253.361 kb on + strand at 3253.361 kb on + strand at 3253.361 kb on + strand at 3253.375 kb on - strand at 3253.383 kb on + strand at 3253.384 kb on - strand at 3253.537 kb on + strand at 3253.543 kb on + strand at 3253.581 kb on - strand at 3253.597 kb on + strand at 3253.733 kb on + strand at 3253.734 kb on - strand at 3253.920 kb on - strand at 3253.932 kb on - strand at 3253.964 kb on - strand at 3254.006 kb on + strand, within ECD_03105 at 3254.023 kb on - strand, within ECD_03105 at 3254.023 kb on - strand, within ECD_03105 at 3254.096 kb on + strand, within ECD_03105 at 3254.145 kb on - strand, within ECD_03105
Per-strain Table
Position Strand Gene LocusTag Fraction Bas26 remove 3,250,758 + +0.6 3,250,759 - -0.1 3,250,759 - +0.4 3,250,759 - +0.7 3,250,818 + ECD_03103 0.15 +0.3 3,250,827 + ECD_03103 0.16 -0.0 3,250,875 - ECD_03103 0.21 -0.3 3,250,931 + ECD_03103 0.27 -0.5 3,250,931 + ECD_03103 0.27 +0.2 3,250,931 + ECD_03103 0.27 +0.3 3,250,932 - ECD_03103 0.27 +0.6 3,250,984 + ECD_03103 0.32 +0.8 3,251,033 + ECD_03103 0.38 -1.2 3,251,211 + ECD_03103 0.57 +0.2 3,251,255 + ECD_03103 0.62 -0.7 3,251,256 - ECD_03103 0.62 +0.2 3,251,393 + ECD_03103 0.76 +2.0 3,251,393 + ECD_03103 0.76 -0.9 3,251,394 - ECD_03103 0.77 +0.3 3,251,490 + ECD_03103 0.87 +0.0 3,251,491 - ECD_03103 0.87 -0.3 3,251,491 - ECD_03103 0.87 -0.2 3,251,491 - ECD_03103 0.87 -0.6 3,251,491 - ECD_03103 0.87 +0.1 3,251,491 - ECD_03103 0.87 +0.5 3,251,493 - ECD_03103 0.87 +0.9 3,251,493 - ECD_03103 0.87 -0.2 3,251,507 - ECD_03103 0.89 +0.3 3,251,523 + +1.0 3,251,523 + +0.7 3,251,523 + -1.9 3,251,524 - -0.2 3,251,569 + +1.0 3,251,609 + -0.4 3,251,609 + +0.6 3,251,609 + +2.0 3,251,610 - -0.2 3,251,616 + +0.1 3,251,621 + -0.2 3,251,621 + -0.2 3,251,622 - -0.4 3,251,715 - -0.1 3,251,954 - ECD_03104 0.15 -0.9 3,252,025 + ECD_03104 0.20 +1.5 3,252,025 + ECD_03104 0.20 +0.4 3,252,025 + ECD_03104 0.20 -0.2 3,252,025 + ECD_03104 0.20 +0.9 3,252,025 + ECD_03104 0.20 +1.2 3,252,026 - ECD_03104 0.20 -0.6 3,252,026 - ECD_03104 0.20 -0.9 3,252,026 - ECD_03104 0.20 -0.1 3,252,026 - ECD_03104 0.20 -0.7 3,252,026 - ECD_03104 0.20 -0.4 3,252,026 - ECD_03104 0.20 -0.1 3,252,029 + ECD_03104 0.20 -0.0 3,252,030 - ECD_03104 0.20 -1.1 3,252,034 + ECD_03104 0.20 +0.3 3,252,035 - ECD_03104 0.20 -0.2 3,252,084 - ECD_03104 0.24 +0.6 3,252,085 + ECD_03104 0.24 +0.8 3,252,086 - ECD_03104 0.24 +0.4 3,252,086 - ECD_03104 0.24 +0.2 3,252,086 - ECD_03104 0.24 -2.0 3,252,086 - ECD_03104 0.24 +0.0 3,252,086 - ECD_03104 0.24 -0.2 3,252,121 + ECD_03104 0.26 -0.0 3,252,122 - ECD_03104 0.26 -0.2 3,252,191 - ECD_03104 0.31 +0.2 3,252,240 - ECD_03104 0.35 +0.7 3,252,303 - ECD_03104 0.39 +0.1 3,252,303 - ECD_03104 0.39 +0.7 3,252,303 - ECD_03104 0.39 +0.4 3,252,341 + ECD_03104 0.42 -0.4 3,252,346 - ECD_03104 0.42 -0.2 3,252,433 - ECD_03104 0.48 +1.2 3,252,556 + ECD_03104 0.57 +0.1 3,252,697 + ECD_03104 0.66 -0.0 3,252,697 + ECD_03104 0.66 +0.1 3,252,729 + ECD_03104 0.68 +0.2 3,252,759 - ECD_03104 0.71 +0.3 3,252,817 - ECD_03104 0.75 +0.4 3,252,825 - ECD_03104 0.75 +1.1 3,252,827 - ECD_03104 0.75 +0.5 3,252,827 - ECD_03104 0.75 +0.3 3,252,827 - ECD_03104 0.75 +0.1 3,252,827 - ECD_03104 0.75 -0.4 3,252,827 - ECD_03104 0.75 -0.4 3,252,827 - ECD_03104 0.75 +0.2 3,252,827 - ECD_03104 0.75 -0.2 3,252,827 - ECD_03104 0.75 -0.3 3,252,878 + ECD_03104 0.79 +1.4 3,252,879 - ECD_03104 0.79 -0.4 3,253,006 + ECD_03104 0.88 +0.6 3,253,006 + ECD_03104 0.88 +0.1 3,253,007 - ECD_03104 0.88 -1.1 3,253,007 - ECD_03104 0.88 +2.0 3,253,020 - ECD_03104 0.89 +0.5 3,253,054 + -0.1 3,253,055 - +0.4 3,253,167 + +0.5 3,253,201 + +1.4 3,253,202 - +0.6 3,253,205 + -0.6 3,253,213 + -0.2 3,253,214 - +0.2 3,253,214 - +1.4 3,253,269 + -2.0 3,253,355 + +3.2 3,253,361 + -0.2 3,253,361 + -1.8 3,253,361 + -0.9 3,253,361 + +0.3 3,253,375 - -1.2 3,253,383 + -0.2 3,253,384 - +0.4 3,253,537 + -0.6 3,253,543 + -0.4 3,253,581 - +0.8 3,253,597 + +0.2 3,253,733 + -0.7 3,253,734 - -0.4 3,253,920 - -0.5 3,253,932 - -0.8 3,253,964 - -0.1 3,254,006 + ECD_03105 0.10 +0.7 3,254,023 - ECD_03105 0.11 -0.2 3,254,023 - ECD_03105 0.11 -0.4 3,254,096 + ECD_03105 0.13 +1.1 3,254,145 - ECD_03105 0.14 -0.0
Or see this region's nucleotide sequence