Strain Fitness in Escherichia coli BL21 around ECD_02995

Experiment: Bas26

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02993 and ECD_02994 are separated by 147 nucleotidesECD_02994 and ECD_02995 are separated by 143 nucleotidesECD_02995 and ECD_02996 are separated by 54 nucleotides ECD_02993: ECD_02993 - D-galactarate dehydrogenase, at 3,141,476 to 3,143,047 _02993 ECD_02994: ECD_02994 - antitoxin of the SohA(PrlF)-YhaV toxin-antitoxin system, at 3,143,195 to 3,143,530 _02994 ECD_02995: ECD_02995 - toxin of the SohB(PrlF)-YhaV toxin-antitoxin system, at 3,143,674 to 3,143,994 _02995 ECD_02996: ECD_02996 - transcriptional repressor of the aga regulon, at 3,144,049 to 3,144,858 _02996 Position (kb) 3143 3144Strain fitness (log2 ratio) -2 -1 0 1 2at 3142.710 kb on - strand, within ECD_02993at 3142.876 kb on - strand, within ECD_02993at 3142.951 kb on + strandat 3143.124 kb on + strandat 3143.124 kb on + strandat 3143.125 kb on - strandat 3143.223 kb on + strandat 3143.267 kb on - strand, within ECD_02994at 3143.292 kb on + strand, within ECD_02994at 3143.349 kb on + strand, within ECD_02994at 3143.349 kb on + strand, within ECD_02994at 3143.349 kb on + strand, within ECD_02994at 3143.350 kb on - strand, within ECD_02994at 3143.350 kb on - strand, within ECD_02994at 3143.350 kb on - strand, within ECD_02994at 3143.350 kb on - strand, within ECD_02994at 3143.353 kb on + strand, within ECD_02994at 3143.354 kb on - strand, within ECD_02994at 3143.354 kb on - strand, within ECD_02994at 3143.354 kb on - strand, within ECD_02994at 3143.386 kb on + strand, within ECD_02994at 3143.386 kb on + strand, within ECD_02994at 3143.387 kb on - strand, within ECD_02994at 3143.387 kb on - strand, within ECD_02994at 3143.387 kb on - strand, within ECD_02994at 3143.389 kb on + strand, within ECD_02994at 3143.389 kb on + strand, within ECD_02994at 3143.389 kb on + strand, within ECD_02994at 3143.389 kb on + strand, within ECD_02994at 3143.389 kb on + strand, within ECD_02994at 3143.390 kb on - strand, within ECD_02994at 3143.390 kb on - strand, within ECD_02994at 3143.565 kb on - strandat 3143.566 kb on + strandat 3143.566 kb on + strandat 3143.566 kb on + strandat 3143.567 kb on - strandat 3143.567 kb on - strandat 3143.604 kb on - strandat 3143.706 kb on + strand, within ECD_02995at 3143.707 kb on - strand, within ECD_02995at 3143.826 kb on + strand, within ECD_02995at 3143.888 kb on - strand, within ECD_02995at 3143.916 kb on - strand, within ECD_02995at 3144.163 kb on - strand, within ECD_02996at 3144.163 kb on - strand, within ECD_02996at 3144.187 kb on - strand, within ECD_02996at 3144.203 kb on - strand, within ECD_02996at 3144.299 kb on - strand, within ECD_02996at 3144.299 kb on - strand, within ECD_02996at 3144.299 kb on - strand, within ECD_02996at 3144.299 kb on - strand, within ECD_02996at 3144.643 kb on - strand, within ECD_02996at 3144.666 kb on - strand, within ECD_02996at 3144.727 kb on - strand, within ECD_02996at 3144.727 kb on - strand, within ECD_02996at 3144.731 kb on - strand, within ECD_02996at 3144.738 kb on - strand, within ECD_02996at 3144.738 kb on - strand, within ECD_02996at 3144.738 kb on - strand, within ECD_02996at 3144.859 kb on - strandat 3144.957 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas26
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3,142,710 - ECD_02993 0.78 +0.3
3,142,876 - ECD_02993 0.89 -0.5
3,142,951 + +0.7
3,143,124 + +0.3
3,143,124 + -1.4
3,143,125 - -0.1
3,143,223 + -0.8
3,143,267 - ECD_02994 0.21 +0.4
3,143,292 + ECD_02994 0.29 +0.6
3,143,349 + ECD_02994 0.46 -0.0
3,143,349 + ECD_02994 0.46 +0.7
3,143,349 + ECD_02994 0.46 -1.3
3,143,350 - ECD_02994 0.46 -0.4
3,143,350 - ECD_02994 0.46 +0.7
3,143,350 - ECD_02994 0.46 +1.8
3,143,350 - ECD_02994 0.46 -0.1
3,143,353 + ECD_02994 0.47 +0.2
3,143,354 - ECD_02994 0.47 -0.1
3,143,354 - ECD_02994 0.47 -0.9
3,143,354 - ECD_02994 0.47 -0.1
3,143,386 + ECD_02994 0.57 +0.8
3,143,386 + ECD_02994 0.57 +1.1
3,143,387 - ECD_02994 0.57 -0.1
3,143,387 - ECD_02994 0.57 +0.9
3,143,387 - ECD_02994 0.57 +0.8
3,143,389 + ECD_02994 0.58 +0.4
3,143,389 + ECD_02994 0.58 -0.1
3,143,389 + ECD_02994 0.58 -0.4
3,143,389 + ECD_02994 0.58 +0.3
3,143,389 + ECD_02994 0.58 -0.0
3,143,390 - ECD_02994 0.58 +1.0
3,143,390 - ECD_02994 0.58 +0.6
3,143,565 - +0.4
3,143,566 + -1.0
3,143,566 + -0.1
3,143,566 + +0.1
3,143,567 - +0.4
3,143,567 - -1.6
3,143,604 - +0.7
3,143,706 + ECD_02995 0.10 +1.0
3,143,707 - ECD_02995 0.10 -0.9
3,143,826 + ECD_02995 0.47 -0.8
3,143,888 - ECD_02995 0.67 -0.9
3,143,916 - ECD_02995 0.75 -0.0
3,144,163 - ECD_02996 0.14 -0.8
3,144,163 - ECD_02996 0.14 -0.3
3,144,187 - ECD_02996 0.17 -1.9
3,144,203 - ECD_02996 0.19 +0.3
3,144,299 - ECD_02996 0.31 -0.4
3,144,299 - ECD_02996 0.31 +0.3
3,144,299 - ECD_02996 0.31 -0.1
3,144,299 - ECD_02996 0.31 -0.6
3,144,643 - ECD_02996 0.73 -0.3
3,144,666 - ECD_02996 0.76 -0.9
3,144,727 - ECD_02996 0.84 -0.5
3,144,727 - ECD_02996 0.84 +0.3
3,144,731 - ECD_02996 0.84 +0.1
3,144,738 - ECD_02996 0.85 -0.8
3,144,738 - ECD_02996 0.85 +0.8
3,144,738 - ECD_02996 0.85 +0.8
3,144,859 - -1.2
3,144,957 - -0.2

Or see this region's nucleotide sequence