Experiment: Bas26
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01966 and ECD_01967 are separated by 2 nucleotides ECD_01967 and ECD_01968 are separated by 5 nucleotides
ECD_01966: ECD_01966 - colanic acid production tyrosine-protein kinase; autokinase; Ugd phosphorylase, at 2,032,497 to 2,034,659
_01966
ECD_01967: ECD_01967 - colanic acid production protein-tyrosine-phosphatase; Wzc-P dephosphorylase, at 2,034,662 to 2,035,105
_01967
ECD_01968: ECD_01968 - colanic acid export protein; outer membrane auxillary lipoprotein, at 2,035,111 to 2,036,250
_01968
Position (kb)
2034
2035
2036 Strain fitness (log2 ratio)
-1
0
1 at 2033.824 kb on - strand, within ECD_01966 at 2033.902 kb on + strand, within ECD_01966 at 2034.060 kb on - strand, within ECD_01966 at 2034.663 kb on + strand at 2034.880 kb on - strand, within ECD_01967 at 2035.089 kb on - strand at 2035.099 kb on + strand at 2035.164 kb on + strand at 2035.224 kb on - strand at 2035.236 kb on - strand, within ECD_01968 at 2035.298 kb on + strand, within ECD_01968 at 2035.302 kb on + strand, within ECD_01968 at 2035.730 kb on + strand, within ECD_01968 at 2035.810 kb on - strand, within ECD_01968 at 2035.860 kb on + strand, within ECD_01968 at 2035.972 kb on - strand, within ECD_01968 at 2036.063 kb on - strand, within ECD_01968
Per-strain Table
Position Strand Gene LocusTag Fraction Bas26 remove 2,033,824 - ECD_01966 0.61 +0.3 2,033,902 + ECD_01966 0.65 +1.0 2,034,060 - ECD_01966 0.72 +0.8 2,034,663 + +0.8 2,034,880 - ECD_01967 0.49 +0.8 2,035,089 - +0.7 2,035,099 + -0.4 2,035,164 + +0.7 2,035,224 - +0.6 2,035,236 - ECD_01968 0.11 -1.6 2,035,298 + ECD_01968 0.16 +1.3 2,035,302 + ECD_01968 0.17 -1.6 2,035,730 + ECD_01968 0.54 +1.2 2,035,810 - ECD_01968 0.61 +1.3 2,035,860 + ECD_01968 0.66 -0.4 2,035,972 - ECD_01968 0.76 +0.1 2,036,063 - ECD_01968 0.84 +1.1
Or see this region's nucleotide sequence