Strain Fitness in Escherichia coli BL21 around ECD_01592

Experiment: Bas26

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01591 and ECD_01592 are separated by 103 nucleotidesECD_01592 and ECD_01593 are separated by 33 nucleotides ECD_01591: ECD_01591 - PLP-dependent beta-cystathionase and maltose regulon regulator, at 1,646,153 to 1,647,325 _01591 ECD_01592: ECD_01592 - adenosine deaminase, at 1,647,429 to 1,648,430 _01592 ECD_01593: ECD_01593 - putative oxidoreductase, at 1,648,464 to 1,649,504 _01593 Position (kb) 1647 1648 1649Strain fitness (log2 ratio) -2 -1 0 1 2at 1646.447 kb on - strand, within ECD_01591at 1646.526 kb on - strand, within ECD_01591at 1647.054 kb on - strand, within ECD_01591at 1648.007 kb on + strand, within ECD_01592at 1648.691 kb on - strand, within ECD_01593at 1648.792 kb on + strand, within ECD_01593at 1648.975 kb on - strand, within ECD_01593

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas26
remove
1,646,447 - ECD_01591 0.25 +0.2
1,646,526 - ECD_01591 0.32 +1.0
1,647,054 - ECD_01591 0.77 +2.3
1,648,007 + ECD_01592 0.58 -1.9
1,648,691 - ECD_01593 0.22 -1.1
1,648,792 + ECD_01593 0.32 +1.1
1,648,975 - ECD_01593 0.49 -0.0

Or see this region's nucleotide sequence