Strain Fitness in Escherichia coli BL21 around ECD_01589

Experiment: Bas26

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01588 and ECD_01589 are separated by 110 nucleotidesECD_01589 and ECD_01590 are separated by 174 nucleotides ECD_01588: ECD_01588 - 7-alpha-hydroxysteroid dehydrogenase, NAD-dependent, at 1,642,470 to 1,643,237 _01588 ECD_01589: ECD_01589 - transcriptional repressor of Mal regulon, at 1,643,348 to 1,644,376 _01589 ECD_01590: ECD_01590 - maltose and glucose-specific PTS enzyme IIB component and IIC component, at 1,644,551 to 1,646,143 _01590 Position (kb) 1643 1644 1645Strain fitness (log2 ratio) -2 -1 0 1at 1642.469 kb on - strandat 1643.484 kb on - strand, within ECD_01589at 1644.003 kb on - strand, within ECD_01589at 1644.318 kb on - strandat 1644.679 kb on + strandat 1644.949 kb on + strand, within ECD_01590at 1644.954 kb on + strand, within ECD_01590at 1645.297 kb on + strand, within ECD_01590

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas26
remove
1,642,469 - +1.0
1,643,484 - ECD_01589 0.13 +0.2
1,644,003 - ECD_01589 0.64 -2.7
1,644,318 - -0.9
1,644,679 + -1.1
1,644,949 + ECD_01590 0.25 +0.3
1,644,954 + ECD_01590 0.25 +0.1
1,645,297 + ECD_01590 0.47 +0.2

Or see this region's nucleotide sequence